

{"id":19,"date":"2014-12-08T22:26:17","date_gmt":"2014-12-08T22:26:17","guid":{"rendered":"https:\/\/compsysbio.inria.fr\/?page_id=19"},"modified":"2018-09-18T09:44:39","modified_gmt":"2018-09-18T07:44:39","slug":"program","status":"publish","type":"page","link":"https:\/\/project.inria.fr\/compsysbio2017\/program\/","title":{"rendered":"Programme"},"content":{"rendered":"<p><\/p>\n<h5>The detailed schedule can be found <a title=\"CompSysBio schedule\" href=\"http:\/\/project.inria.fr\/compsysbio2017\/files\/2017\/03\/CompSysBio-2017-programme.pdf\">here<\/a>.<\/h5>\n<h4>Plenary lectures<\/h4>\n<h5><strong>Stochastic Modeling<\/strong><\/h5>\n<h6><strong><a href=\"https:\/\/amolf.nl\/research-groups\/biochemical-networks\" target=\"_blank\" rel=\"noopener\">Pieter Rein TEN WOLDE<br \/>\n<\/a><\/strong><em>Modeling noise in biochemical networks<\/em><\/h6>\n<h6><strong><a href=\"http:\/\/www.iamruthbaker.com\/\" target=\"_blank\" rel=\"noopener\">Ruth BAKER<br \/>\n<\/a><\/strong><em>Variance reduction approaches to efficient stochastic simulation<\/em><\/h6>\n<h5><strong>Network model inference<\/strong><\/h5>\n<h6><strong><a href=\"http:\/\/www.theosysbio.bio.ic.ac.uk\/people\/ann-babtie\/\" target=\"_blank\" rel=\"noopener\">Ann BABTIE<br \/>\n<\/a><\/strong><em>Model inference and uncertainty in systems biology<\/em><\/h6>\n<h6><strong><a href=\"http:\/\/www.csb.ethz.ch\" target=\"_blank\" rel=\"noopener\">J\u00f6rg STELLING<br \/>\n<\/a><\/strong><em>Identification of dynamic cellular network models under uncertainty<\/em><\/h6>\n<h5><strong>Control Theory in Systems Biology<\/strong><\/h5>\n<h6><strong><a href=\"https:\/\/www.bsse.ethz.ch\/ctsb\" target=\"_blank\" rel=\"noopener\">Mustafa KHAMMASH<br \/>\n<\/a><\/strong><em>On the dynamic benefits of intracellular randomness<\/em><\/h6>\n<h6><strong><a href=\"http:\/\/elsamadlab.ucsf.edu\" target=\"_blank\" rel=\"noopener\">Hana EL-SAMAD<br \/>\n<\/a><\/strong><em>Anticipators and Procrastinators, Synthetic Biology and Big Data<\/em><\/h6>\n<h6><strong><a href=\"http:\/\/gingproc.iim.csic.es\/~julio\/\" target=\"_blank\" rel=\"noopener\">Julio BANGA<br \/>\n<\/a><\/strong><em>Optimal control in systems and synthetic biology<\/em><\/h6>\n<h5><strong>Evolutionary Systems<\/strong><\/h5>\n<h6><strong><a href=\"http:\/\/www.igc.gulbenkian.pt\/igordo\" target=\"_blank\" rel=\"noopener\">Isabel GORDO<br \/>\n<\/a><\/strong><em>Following evolution of commensal bacteria in real tim<\/em>e<\/h6>\n<h6><strong><a href=\"http:\/\/www.phys.ens.fr\/~awalczak\/\">Aleksandra WALCZAK<br \/>\n<\/a><\/strong><em>Diversity of immune systems<\/em><\/h6>\n<h5><strong>Dynamical Systems<\/strong><\/h5>\n<h6><strong><a href=\"http:\/\/www.ulb.ac.be\/sciences\/utc\/DUPONT\/gdupont.html\" target=\"_blank\" rel=\"noopener\">Genevi\u00e8ve DUPONT<br \/>\n<\/a><\/strong><em>Switches, oscillations and waves in cell biology: a modeling-based approach<\/em><\/h6>\n<h6><strong><a href=\"http:\/\/www.davidrand.co.uk\/\">David RAND<br \/>\n<\/a><\/strong><em>Cell signaling: stochastic dynamics, information and decision-making<\/em><\/h6>\n<h5><strong>Outlook Keynote<\/strong><\/h5>\n<h6><strong><a href=\"http:\/\/dbkgroup.org\/dbk.htm\" target=\"_blank\" rel=\"noopener\">Douglas KELL<br \/>\n<\/a><\/strong><em>The cellular uptake of pharmaceutical drugs is mediated by proteinaceous transporters and is thus a problem not of biophysics but of systems biology<\/em><\/h6>\n<p>&nbsp;<\/p>\n<h4>Afternoon blackboard teaching and hands-on sessions<\/h4>\n<h6><strong><a href=\"http:\/\/contraintes.inria.fr\/~batt\/home.html\" target=\"_blank\" rel=\"noopener\">Gregory BATT<br \/>\n<\/a><\/strong><em>Basics in modeling and model calibration: the toggle switch example<\/em><\/h6>\n<h6><strong><a href=\"http:\/\/bruggemanlab.nl\/\" target=\"_blank\" rel=\"noopener\">Frank BRUGGEMAN<br \/>\n<\/a><\/strong><em><span class=\"\">Bacterial fitness maximisation and phenotypic diversification strategies<\/span><\/em><\/h6>\n<h6><strong><a href=\"http:\/\/compbio.igc.gulbenkian.pt\/nmd\/node\/23\" target=\"_blank\" rel=\"noopener\">Claudine CHAOUIYA<br \/>\n<\/a><\/strong><em>Qualitative dynamical modelling of (multi-) cellular networks<\/em><\/h6>\n<h6><strong><a href=\"https:\/\/team.inria.fr\/ibis\/\">Eugenio CINQUEMANI<br \/>\n<\/a><\/strong><em>Modeling of stochastic gene expression<\/em><\/h6>\n<h6><strong><a href=\"https:\/\/team.inria.fr\/ibis\/\" target=\"_blank\" rel=\"noopener\">Hidde DE JONG<br \/>\n<\/a><\/strong><em>Dynamic models integrating metabolism and gene expression<\/em><\/h6>\n<h6><strong><a href=\"https:\/\/www2.hu-berlin.de\/biologie\/theorybp\/index.php\" target=\"_blank\" rel=\"noopener\">Markus KRANTZ<br \/>\n<\/a><\/strong><em>Scalable mechanistic modeling of cellular signal transduction<\/em><\/h6>\n<p><!--\n\n\n<h3><span style=\"color: #0000ff\">The detailed schedule can be found <a title=\"CompSysBio schedule\" href=\"http:\/\/project.inria.fr\/compsysbio2017\/files\/2015\/04\/CompSysBio-schedule.pdf\" target=\"_blank\"><strong>here<\/strong><\/a>.<\/span><\/h3>\n\n\n\n\n<h4><strong>April 6, 2015\n<\/strong><strong>Opening session (20:30-21:30)<\/strong><\/h4>\n\n\n\n\n<h4><strong>Keynote lecture<\/strong><\/h4>\n\n\n\n\n<h6><strong><a href=\"http:\/\/www.falw.vu\/~microb\/mcf\/personnel\/htm\/westerhoff.html\" target=\"_blank\">Hans Westerhoff\n<\/a><\/strong><span style=\"color: #000000\"><a style=\"color: #000000\" title=\"Abstract\" href=\"http:\/\/project.inria.fr\/compsysbio2017\/files\/2015\/03\/Westerhoff_CompSysBio.pdf\" target=\"_blank\"><em>Is Life computable? What remains to be discovered<\/em><\/a><\/span><\/h6>\n\n\n\n\n<h4><strong>April 7, 2015\nMulti-scale &amp; whole-cell models (8:30-12:00)<\/strong><\/h4>\n\n\n\n\n<h6><strong><a href=\"https:\/\/www2.hu-berlin.de\/biologie\/theorybp\/\" target=\"_blank\">Edda Klipp<\/a>\n<\/strong><i>Mathematical modeling of cellular stress response<\/i><\/h6>\n\n\n\n\n<h6><strong><span style=\"color: #000000\"><a href=\"http:\/\/homepages.inf.ed.ac.uk\/vdanos\/\" target=\"_blank\">Vincent Danos<\/a>\n<\/span><\/strong><em><span style=\"color: #000000\">Whole-cell models and implicit regulation <\/span><\/em><\/h6>\n\n\n\n\n<h4><strong>April 8, 2015\nSpatial dynamics &amp; morphogenesis (8:30-12:00)<\/strong><\/h4>\n\n\n\n\n<h6><strong><a href=\"http:\/\/www.cytosim.org\" target=\"_blank\">Fran\u00e7ois N\u00e9delec<\/a>\n<\/strong><em>Physical Models of Cytoskeletal Processes<\/em><\/h6>\n\n\n\n\n<h6><strong><a href=\"https:\/\/team.inria.fr\/virtualplants\/christophe-godin\/\" target=\"_blank\">Christophe Godin<\/a><\/strong>\n<em>Phyllotaxis: the amazing emergent patterning property of an organ-to-organ interaction system<\/em><\/h6>\n\n\n\n\n<h4><strong>April 9, 2015\nDynamical systems &amp; inverse problems (8:30-12:00)<\/strong><\/h4>\n\n\n\n\n<h6><strong><a href=\"http:\/\/dsb.upf.edu\" target=\"_blank\">Jordi Garcia-Ojalvo<\/a><\/strong>\n<span style=\"color: #000000\"><a style=\"color: #000000\" title=\"Abstract\" href=\"http:\/\/project.inria.fr\/compsysbio2017\/files\/2015\/03\/Garcia_Ojalvo_CompSysBio.pdf\" target=\"_blank\"><i>Pulsatile regulation of cellular behavior<\/i><\/a><\/span><\/h6>\n\n\n\n\n<h6><strong><a href=\"http:\/\/www.lps.ens.fr\/~cocco\/\" target=\"_blank\">Simona Cocco<\/a>\n<\/strong><i>Inference of Networks from biological data: applications to neurobiology and genomics<\/i><i> <\/i><\/h6>\n\n\n\n\n<h4><strong>April 10, 2015\nControl theory &amp; stochastic modeling (8:30-12:00)<\/strong><\/h4>\n\n\n\n\n<h6><a href=\"http:\/\/www.bsse.ethz.ch\/ctsb\" target=\"_blank\"><strong>Mustafa Khammash<\/strong>\n<\/a><em>Real-time control of living cells in a noisy environment<\/em><\/h6>\n\n\n\n\n<h6><strong><a href=\"http:\/\/molinalab.bio.ed.ac.uk\/home.html\" target=\"_blank\">Nacho Molina<\/a>\n<\/strong><span style=\"color: #000000\"><i>Model-based analysis of time series in Biology: stochastic gene expression as a case study <\/i><\/span><\/h6>\n\n\n\n\n<h4><strong>Closing session (16:00-19:00)<\/strong><\/h4>\n\n\n\n\n<h6><strong><a href=\"http:\/\/nibelung.bioquant.uni-heidelberg.de\/Welcome.html\" target=\"_blank\">Thomas H\u00f6fer\n<\/a><\/strong><i>Stem cell dynamics by numbers: Hematopoiesis and immunity<\/i><\/h6>\n\n\n\n\n<h6><strong><a href=\"http:\/\/mpf.biol.vt.edu\/lab_website\/\" target=\"_blank\">John Tyson<\/a>\n<\/strong><i>What Can Mathematical Modeling Teach Us About Cell Cycle Regulation? <\/i><\/h6>\n\n\n\n\n<h4><strong>April 7-9, 2015\nAfternoon blackboard teaching and hands-on sessions (16:00-19:00)<\/strong><\/h4>\n\n\n\n\n<h6><a href=\"http:\/\/contraintes.inria.fr\/~batt\/home.html\" target=\"_blank\"><strong>Gregory Batt<\/strong>\n<\/a><i>Modeling, fitting and controlling biological systems: the toggle switch example<\/i><\/h6>\n\n\n\n\n<h6><strong><a href=\"http:\/\/www.inrialpes.fr\/Berry\/\" target=\"_blank\">Hugues Berry <\/a><\/strong>&amp; <strong><a href=\"http:\/\/www.cytosim.org\" target=\"_blank\">Fran\u00e7ois N\u00e9delec<\/a>\n<\/strong><i>Modeling gene expression: stochasticity and spatial dynamics<\/i><\/h6>\n\n\n\n\n<h6><strong><a href=\"http:\/\/ibis.inrialpes.fr\/article165.html\" target=\"_blank\">Hidde de Jong<\/a>\n<\/strong><i>Towards integrated models of cellular processes: metabolism, gene expression, signaling<\/i><\/h6>\n\n\n\n\n<h6><strong><a href=\"http:\/\/www.biologie.ens.fr\/csb\/\" target=\"_blank\">Denis Thieffry<\/a>\n<\/strong><i>Qualitative dynamical modeling of cellular networks <\/i><\/h6>\n\n\n\n\n<h4><strong>Evening sessions\nSelected short talks from participants (20:00-21:00)\nPoster sessions (21:00-22:00)<\/strong><\/h4>\n\n\n--><\/p>","protected":false},"excerpt":{"rendered":"<p>The detailed schedule can be found here. Plenary lectures Stochastic Modeling Pieter Rein TEN WOLDE Modeling noise in biochemical networks Ruth BAKER Variance reduction approaches to efficient stochastic simulation Network model inference Ann BABTIE Model inference and uncertainty in systems biology J\u00f6rg STELLING Identification of dynamic cellular network models under\u2026<\/p>\n<p> <a class=\"continue-reading-link\" href=\"https:\/\/project.inria.fr\/compsysbio2017\/program\/\"><span>Continue reading<\/span><i class=\"crycon-right-dir\"><\/i><\/a> <\/p>\n","protected":false},"author":935,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-19","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/project.inria.fr\/compsysbio2017\/wp-json\/wp\/v2\/pages\/19","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/project.inria.fr\/compsysbio2017\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/project.inria.fr\/compsysbio2017\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/project.inria.fr\/compsysbio2017\/wp-json\/wp\/v2\/users\/935"}],"replies":[{"embeddable":true,"href":"https:\/\/project.inria.fr\/compsysbio2017\/wp-json\/wp\/v2\/comments?post=19"}],"version-history":[{"count":14,"href":"https:\/\/project.inria.fr\/compsysbio2017\/wp-json\/wp\/v2\/pages\/19\/revisions"}],"predecessor-version":[{"id":532,"href":"https:\/\/project.inria.fr\/compsysbio2017\/wp-json\/wp\/v2\/pages\/19\/revisions\/532"}],"wp:attachment":[{"href":"https:\/\/project.inria.fr\/compsysbio2017\/wp-json\/wp\/v2\/media?parent=19"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}