

{"id":19,"date":"2014-12-08T22:26:17","date_gmt":"2014-12-08T22:26:17","guid":{"rendered":"https:\/\/compsysbio.inria.fr\/?page_id=19"},"modified":"2019-03-26T15:03:29","modified_gmt":"2019-03-26T14:03:29","slug":"program","status":"publish","type":"page","link":"https:\/\/project.inria.fr\/compsysbio2019\/program\/","title":{"rendered":"Programme"},"content":{"rendered":"<p>The detailed schedule can be found <a href=\"http:\/\/project.inria.fr\/compsysbio2019\/files\/2019\/03\/CompSysBio-2019-schedule.pdf\">here<\/a>.<\/p>\n<h4>Plenary lectures<\/h4>\n<h5><strong>Keynote lecture<br \/>\n<\/strong><\/h5>\n<h6><a href=\"http:\/\/www.physics.rockefeller.edu\/siggia\/\"><strong>Eric Siggia<\/strong><\/a><br \/>\n<em>Geometry, Genetics and Gene regulation<\/em><\/h6>\n<h5><strong>Control Theory in Systems Biology<\/strong><\/h5>\n<h6><strong><a href=\"https:\/\/sites.google.com\/view\/oteromuras\">Irene Otero-Muras<\/a><br \/>\n<\/strong><em>Inferring design principles in systems and synthetic biology through optimization-based methods<\/em><\/h6>\n<h6><a href=\"http:\/\/sysos.eng.ox.ac.uk\/wiki\/index.php\/User:Antonis\"><strong>Antonis Papachristodoulou<\/strong><\/a><br \/>\n<em>Control theory tools for the analysis and design of biological networks<\/em><\/h6>\n<h5><strong>Dynamical Systems in Biology<br \/>\n<\/strong><\/h5>\n<h6><strong><a href=\"https:\/\/naef-lab.epfl.ch\/\">Felix Na\u00ebf<\/a><br \/>\n<\/strong><em>Organization of temporal gene expression: from promoter cycles to circadian clocks<\/em><\/h6>\n<h6><strong><a href=\"https:\/\/www.mdc-berlin.de\/training\/phd_program\/People\/Faculty\/Faculty_info\/Research_Groups\/Wolf\">Jana Wolf<\/a><br \/>\n<\/strong><em>Modeling signalling networks and gene expression involved in cancer<\/em><\/h6>\n<h5><strong>Evolutionary Systems Biology<br \/>\n<\/strong><\/h5>\n<h6><a href=\"http:\/\/www.gorelab.org\/\"><strong>Jeff Gore<\/strong><\/a><br \/>\n<em>The dynamics of biological populations<\/em><\/h6>\n<h6><a href=\"https:\/\/warwick.ac.uk\/fac\/sci\/lifesci\/people\/osoyer\/\"><strong>Orkun Soyer<\/strong><\/a><br \/>\n<em>Evolution of cell metabolism and metabolic interactions<\/em><\/h6>\n<h5><strong>Spatio-temporal models<br \/>\n<\/strong><\/h5>\n<h6><a href=\"http:\/\/www.ecm.ub.es\/nonlinphys\/english\/membres\/ibanes.html\"><strong>Marta Iba\u00f1es<\/strong><\/a><br \/>\n<em>Models for pattern formation in development<\/em><\/h6>\n<h6><a href=\"https:\/\/www.bsse.ethz.ch\/cobi\/group\/people\/person-detail.html?persid=149424\"><strong>Dagmar Iber<\/strong><\/a><br \/>\n<em>From Networks to Function \u2013 Computational Models of Organogenesis<\/em><\/h6>\n<h5><strong>Integrated molecular networks<\/strong><\/h5>\n<h6><a href=\"http:\/\/www.imsb.ethz.ch\/research\/zampieri-group\/research.html\"><strong>Mattia Zampieri<\/strong><\/a><br \/>\n<em><span lang=\"EN-GB\">Using metabolic fingerprints to rationally design combination therapies<\/span><\/em><strong><br \/>\n<\/strong><\/h6>\n<h6><strong><a href=\"https:\/\/www.imperial.ac.uk\/people\/andrea.weisse\">Andrea Weisse<\/a><br \/>\n<\/strong><em>Modelling bacterial growth<\/em><\/h6>\n<p><!--\n\n\n<h5><strong>Network model inference<\/strong><\/h5>\n\n\n\n\n<h6><strong><a href=\"http:\/\/www.theosysbio.bio.ic.ac.uk\/people\/michael-stumpf\/\">Michael Stumpf<\/a><\/strong><\/h6>\n\n\n\n\n<h5><strong>Systems Biology &amp; Society<\/strong><\/h5>\n\n\n\n\n<h6><a href=\"http:\/\/millar.bio.ed.ac.uk\/\"><strong>Andrew Millar<\/strong><\/a><strong>\n<\/strong><em>Economic analysis to steer research in Systems and Synthetic Biology<\/em><\/h6>\n\n\n--><\/p>\n<h4>Afternoon blackboard teaching and hands-on sessions<\/h4>\n<h6><strong><a href=\"http:\/\/compbio.igc.gulbenkian.pt\/nmd\/node\/23\" target=\"_blank\" rel=\"noopener\">Claudine Chaouiya<br \/>\n<\/a><\/strong><em>Qualitative dynamical modelling of (multi-) cellular networks<\/em><\/h6>\n<h6><strong><a href=\"http:\/\/genome.jouy.inra.fr\/~agoelzer\/\" target=\"_blank\" rel=\"noopener\">Anne Goelzer<\/a><br \/>\n<\/strong><em>Resource Balance Analysis<\/em><\/h6>\n<h6><strong><a href=\"https:\/\/team.inria.fr\/ibis\/\" target=\"_blank\" rel=\"noopener\">Hidde de Jong<br \/>\n<\/a><\/strong><em>Dynamic models integrating metabolism and gene expression<\/em><\/h6>\n<h6><strong><a href=\"https:\/\/www.bsse.ethz.ch\/ctsb\" target=\"_blank\" rel=\"noopener\">Mustafa Khammash<\/a><br \/>\n<\/strong><em>Stochastic modeling, simulation and analysis<\/em><\/h6>\n<h6><strong><a href=\"http:\/\/genome.jouy.inra.fr\/~wliebermeis\/index_en.html\" target=\"_blank\" rel=\"noopener\">Wolfram Liebermeister<\/a><br \/>\n<\/strong><em>Enzyme economy in metabolic models<\/em><\/h6>\n<h6><strong><a href=\"http:\/\/www.cytosim.org\/\" target=\"_blank\" rel=\"noopener\">Fran\u00e7ois N\u00e9d\u00e9lec<\/a><br \/>\n<\/strong><em>Simulation of intracellular mechanics<\/em><\/h6>\n<h6><strong><a href=\"https:\/\/research.pasteur.fr\/en\/member\/jakob-ruess\/\" target=\"_blank\" rel=\"noopener\">Jakob Ruess<\/a><br \/>\n<\/strong><em>Optimally learning dynamical models from data<\/em><\/h6>\n<p><!--\n\n\n<h3><span style=\"color: #0000ff\">The detailed schedule can be found <a title=\"CompSysBio schedule\" href=\"http:\/\/project.inria.fr\/compsysbio2017\/files\/2015\/04\/CompSysBio-schedule.pdf\" target=\"_blank\"><strong>here<\/strong><\/a>.<\/span><\/h3>\n\n\n\n\n<h4><strong>April 6, 2015\n<\/strong><strong>Opening session (20:30-21:30)<\/strong><\/h4>\n\n\n\n\n<h4><strong>Keynote lecture<\/strong><\/h4>\n\n\n\n\n<h6><strong><a href=\"http:\/\/www.falw.vu\/~microb\/mcf\/personnel\/htm\/westerhoff.html\" target=\"_blank\">Hans Westerhoff\n<\/a><\/strong><span style=\"color: #000000\"><a style=\"color: #000000\" title=\"Abstract\" href=\"http:\/\/project.inria.fr\/compsysbio2017\/files\/2015\/03\/Westerhoff_CompSysBio.pdf\" target=\"_blank\"><em>Is Life computable? What remains to be discovered<\/em><\/a><\/span><\/h6>\n\n\n\n\n<h4><strong>April 7, 2015\nMulti-scale &amp; whole-cell models (8:30-12:00)<\/strong><\/h4>\n\n\n\n\n<h6><strong><a href=\"https:\/\/www2.hu-berlin.de\/biologie\/theorybp\/\" target=\"_blank\">Edda Klipp<\/a>\n<\/strong><i>Mathematical modeling of cellular stress response<\/i><\/h6>\n\n\n\n\n<h6><strong><span style=\"color: #000000\"><a href=\"http:\/\/homepages.inf.ed.ac.uk\/vdanos\/\" target=\"_blank\">Vincent Danos<\/a>\n<\/span><\/strong><em><span style=\"color: #000000\">Whole-cell models and implicit regulation <\/span><\/em><\/h6>\n\n\n\n\n<h4><strong>April 8, 2015\nSpatial dynamics &amp; morphogenesis (8:30-12:00)<\/strong><\/h4>\n\n\n\n\n<h6><strong><a href=\"http:\/\/www.cytosim.org\" target=\"_blank\">Fran\u00e7ois N\u00e9delec<\/a>\n<\/strong><em>Physical Models of Cytoskeletal Processes<\/em><\/h6>\n\n\n\n\n<h6><strong><a href=\"https:\/\/team.inria.fr\/virtualplants\/christophe-godin\/\" target=\"_blank\">Christophe Godin<\/a><\/strong>\n<em>Phyllotaxis: the amazing emergent patterning property of an organ-to-organ interaction system<\/em><\/h6>\n\n\n\n\n<h4><strong>April 9, 2015\nDynamical systems &amp; inverse problems (8:30-12:00)<\/strong><\/h4>\n\n\n\n\n<h6><strong><a href=\"http:\/\/dsb.upf.edu\" target=\"_blank\">Jordi Garcia-Ojalvo<\/a><\/strong>\n<span style=\"color: #000000\"><a style=\"color: #000000\" title=\"Abstract\" href=\"http:\/\/project.inria.fr\/compsysbio2017\/files\/2015\/03\/Garcia_Ojalvo_CompSysBio.pdf\" target=\"_blank\"><i>Pulsatile regulation of cellular behavior<\/i><\/a><\/span><\/h6>\n\n\n\n\n<h6><strong><a href=\"http:\/\/www.lps.ens.fr\/~cocco\/\" target=\"_blank\">Simona Cocco<\/a>\n<\/strong><i>Inference of Networks from biological data: applications to neurobiology and genomics<\/i><i> <\/i><\/h6>\n\n\n\n\n<h4><strong>April 10, 2015\nControl theory &amp; stochastic modeling (8:30-12:00)<\/strong><\/h4>\n\n\n\n\n<h6><a href=\"http:\/\/www.bsse.ethz.ch\/ctsb\" target=\"_blank\"><strong>Mustafa Khammash<\/strong>\n<\/a><em>Real-time control of living cells in a noisy environment<\/em><\/h6>\n\n\n\n\n<h6><strong><a href=\"http:\/\/molinalab.bio.ed.ac.uk\/home.html\" target=\"_blank\">Nacho Molina<\/a>\n<\/strong><span style=\"color: #000000\"><i>Model-based analysis of time series in Biology: stochastic gene expression as a case study <\/i><\/span><\/h6>\n\n\n\n\n<h4><strong>Closing session (16:00-19:00)<\/strong><\/h4>\n\n\n\n\n<h6><strong><a href=\"http:\/\/nibelung.bioquant.uni-heidelberg.de\/Welcome.html\" target=\"_blank\">Thomas H\u00f6fer\n<\/a><\/strong><i>Stem cell dynamics by numbers: Hematopoiesis and immunity<\/i><\/h6>\n\n\n\n\n<h6><strong><a href=\"http:\/\/mpf.biol.vt.edu\/lab_website\/\" target=\"_blank\">John Tyson<\/a>\n<\/strong><i>What Can Mathematical Modeling Teach Us About Cell Cycle Regulation? <\/i><\/h6>\n\n\n\n\n<h4><strong>April 7-9, 2015\nAfternoon blackboard teaching and hands-on sessions (16:00-19:00)<\/strong><\/h4>\n\n\n\n\n<h6><a href=\"http:\/\/contraintes.inria.fr\/~batt\/home.html\" target=\"_blank\"><strong>Gregory Batt<\/strong>\n<\/a><i>Modeling, fitting and controlling biological systems: the toggle switch example<\/i><\/h6>\n\n\n\n\n<h6><strong><a href=\"http:\/\/www.inrialpes.fr\/Berry\/\" target=\"_blank\">Hugues Berry <\/a><\/strong>&amp; <strong><a href=\"http:\/\/www.cytosim.org\" target=\"_blank\">Fran\u00e7ois N\u00e9delec<\/a>\n<\/strong><i>Modeling gene expression: stochasticity and spatial dynamics<\/i><\/h6>\n\n\n\n\n<h6><strong><a href=\"http:\/\/ibis.inrialpes.fr\/article165.html\" target=\"_blank\">Hidde de Jong<\/a>\n<\/strong><i>Towards integrated models of cellular processes: metabolism, gene expression, signaling<\/i><\/h6>\n\n\n\n\n<h6><strong><a href=\"http:\/\/www.biologie.ens.fr\/csb\/\" target=\"_blank\">Denis Thieffry<\/a>\n<\/strong><i>Qualitative dynamical modeling of cellular networks <\/i><\/h6>\n\n\n\n\n<h4><strong>Evening sessions\nSelected short talks from participants (20:00-21:00)\nPoster sessions (21:00-22:00)<\/strong><\/h4>\n\n\n--><\/p>","protected":false},"excerpt":{"rendered":"<p>The detailed schedule can be found here. Plenary lectures Keynote lecture Eric Siggia Geometry, Genetics and Gene regulation Control Theory in Systems Biology Irene Otero-Muras Inferring design principles in systems and synthetic biology through optimization-based methods Antonis Papachristodoulou Control theory tools for the analysis and design of biological networks Dynamical\u2026<\/p>\n<p> <a class=\"continue-reading-link\" href=\"https:\/\/project.inria.fr\/compsysbio2019\/program\/\"><span>Continue reading<\/span><i class=\"crycon-right-dir\"><\/i><\/a> <\/p>\n","protected":false},"author":935,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-19","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/project.inria.fr\/compsysbio2019\/wp-json\/wp\/v2\/pages\/19","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/project.inria.fr\/compsysbio2019\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/project.inria.fr\/compsysbio2019\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/project.inria.fr\/compsysbio2019\/wp-json\/wp\/v2\/users\/935"}],"replies":[{"embeddable":true,"href":"https:\/\/project.inria.fr\/compsysbio2019\/wp-json\/wp\/v2\/comments?post=19"}],"version-history":[{"count":40,"href":"https:\/\/project.inria.fr\/compsysbio2019\/wp-json\/wp\/v2\/pages\/19\/revisions"}],"predecessor-version":[{"id":730,"href":"https:\/\/project.inria.fr\/compsysbio2019\/wp-json\/wp\/v2\/pages\/19\/revisions\/730"}],"wp:attachment":[{"href":"https:\/\/project.inria.fr\/compsysbio2019\/wp-json\/wp\/v2\/media?parent=19"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}