{"id":71,"date":"2020-10-09T16:21:28","date_gmt":"2020-10-09T14:21:28","guid":{"rendered":"https:\/\/project.inria.fr\/dnarxiv\/?page_id=71"},"modified":"2025-11-26T17:29:42","modified_gmt":"2025-11-26T16:29:42","slug":"publications-2","status":"publish","type":"page","link":"https:\/\/project.inria.fr\/dnarxiv\/publications-2\/","title":{"rendered":"Publications"},"content":{"rendered":"<h3>Journals<\/h3>\n<ul>\n<li> F. De Moor, O. Boull\u00e9, D. Lavenier, De-Bruijn graph partitioning for scalable and accurate DNA storage processing, Bioinformatics, Volume 41, Issue 11, November 2025, btaf618 <\/li>\n<li> C. Berton, G. Coatrieux, H. Gasnier, S. Haddad, R. Bellafqira and D. Lavenier, &#8220;A Dynamic Sliding Window Encoding for Secured DNA Data Storage Compliant With Biological and Indexing Constraints,&#8221; in IEEE Access, vol. 13, pp. 66009-66030, 2025 <\/li>\n<li>J. Leblanc, O. Boulle, E. Roux, J. Nicolas, D. Lavenier, Y. Audic&#8221;, Fully in vitro iterative construction of a 24 kb-long artificial DNA sequence to store digital information&#8221;, in BioTechniques, vol. 76, no. 5, pp. 203-215, 2024<\/li>\n<li>B. Hamoum and E. Dupraz, &#8220;Channel Model and Decoder With Memory for DNA Data Storage With Nanopore Sequencing,&#8221; in IEEE Access, vol. 11, pp. 52075-52087, 2023<\/li>\n<\/ul>\n<h3>Conferences<\/h3>\n<ul>\n<li> J. Mateos, D. Lavenier, M. Dimopoulou, A. Genot, M. Antonini, Primer design for DNA storage random access. CORESA 2024 &#8211; 23\u00e8me conf\u00e9rence sur COmpression et REpr\u00e9sentation des Signaux Audiovisuels, Nov 2024, Rennes, France. pp.1-3.<\/li>\n<li>C. Berton, G. Coatrieu, D. Lavenier, S. Haddad, Dynamic sliding window encoding for data storage on DNA under biological and indexing constraints, EUSIPCO2023, 31st European Signal Processing Conference, Helsinki, Finland, September 2023<\/li>\n<li>B. Hamoum, A. Ezzeddine, E. Dupraz, Synchronization algorithms from high-rate LDPC codes for DNA data storage, Rhodes, 24th International Conference on Digital Signal Processing, Island of Rhodes, Greece, June 2023.<\/li>\n<li>D. Lavenier, DNA Storage: Synthesis and Sequencing Semiconductor Technologies, 68th Annual IEEE International Electron Devices Meeting, San Francisco, Dec. 2022 [<a href=\"https:\/\/hal.archives-ouvertes.fr\/hal-03902786\">HAL<\/a>]<\/li>\n<li>B. Hamoum, E. Dupraz, L. Conde-Canencia, A DNA Data Storage Channel Model Trained on Genomic Data with Nanopore Sequencing, <a href=\"https:\/\/mosla.mathematik.uni-marburg.de\/dsmm\/\">DSMM 2022<\/a>, 1st International Conference on Data Storage in Molecular Media, 21-23 March 2022, virtual conference [<a href=\"https:\/\/project.inria.fr\/dnarxiv\/files\/2022\/02\/abstract_DSMM2022_Codage.pdf\">abstract<\/a>][<a href=\"https:\/\/project.inria.fr\/dnarxiv\/files\/2022\/03\/DSMM2022_coding.pdf\">slides<\/a>]<\/li>\n<li> C. Berton, G. Coatrieux, D. Lavenier, A first proposal for secure data storage into DNA molecules compliant with biological constraints, <a href=\"https:\/\/mosla.mathematik.uni-marburg.de\/dsmm\/\">DSMM 2022<\/a>, 1st International Conference on Data Storage in Molecular Media, 21-23 March 2022, virtual conference [<a href=\"https:\/\/project.inria.fr\/dnarxiv\/files\/2022\/02\/abstract_DSMM2022_Securite.pdf\">abstract<\/a>] [<a href=\"https:\/\/project.inria.fr\/dnarxiv\/files\/2022\/03\/DSMM2022_security.pdf\">slides<\/a>]<\/li>\n<li> O. Boull\u00e9, D. Lavenier, Experimental DNA storage platform, <a href=\"https:\/\/mosla.mathematik.uni-marburg.de\/dsmm\/\">DSMM 2022<\/a>, 1st International Conference on Data Storage in Molecular Media, 21-23 March 2022, virtual conference [<a href=\"https:\/\/project.inria.fr\/dnarxiv\/files\/2022\/02\/abstract_Plateform_DSMM2022.pdf\">abstract<\/a>] [<a href=\"https:\/\/project.inria.fr\/dnarxiv\/files\/2022\/03\/DSMM2022_platform.pdf\">slides<\/a>]<\/li>\n<li> B. Hamoum, E. Dupraz, L. Conde-Canencia, D. Lavenier, Channel Model with Memory for DNA Data Storage with Nanopore Sequencing, 2021 11th International Symposium on Topics in Coding, ISTC 2021, <a href=\"https:\/\/hal.archives-ouvertes.fr\/hal-03337117\/\">HAL<\/a><\/li>\n<\/ul>\n<h3>PhD<\/h3>\n<ul>\n<li> Chlo\u00e9 Berton. S\u00e9curit\u00e9 des donn\u00e9es stock\u00e9es sur mol\u00e9cules d\u2019ADN. Informatique [cs]. Ecole nationale sup\u00e9rieure Mines-T\u00e9l\u00e9com Atlantique, 2024 (<a href=\"https:\/\/theses.hal.science\/tel-04829876v1\">Document <\/a>) <\/li>\n<li>Belaid Hamoum, DNA data storage algorithms and synchronization, PhD Thesis, UBS, Dec. 15, 2022 (<a href=\"https:\/\/project.inria.fr\/dnarxiv\/files\/2023\/02\/Thesis_DNA_data_storage_Belaid_HAMOUM.pdf\">Document<\/a>)<\/li>\n<\/ul>\n<h3>Talks<\/h3>\n<ul>\n<li> D. Lavenier, Information Storage on DNA, Journ\u00e9e scientifique du L2TI, Paris, d\u00e9c. 2024 <\/li>\n<li> E. Dupraz, Codage canal pour le stockage de donn\u00e9es dans l\u2019ADN, C\u00e9r\u00e9monie de remise des prix IMT-Acad\u00e9mie des sciences, octobre 2024 <\/li>\n<li> D. Lavenier, DNA Storage, CORESA 2024, Rennes, nov. 2024. <\/li>\n<li> E. Dupraz, An accurate channel Model with memory for DNA data storage, Journ\u00e9e GdR IASIS, Juillet 2023 <\/li>\n<li> D. Lavenier, Tutoriel: DNA Storage Overview, Journ\u00e9e GdR IASIS, Paris, Juillet 2023 <\/li>\n<li> D. Lavenier, Data Storage on DNA, Big Day 2022, Journ\u00e9e Master Bio-informatique de Rennes, nov. 2022 <\/li>\n<li> D. Lavenier, Data Storage on Synthetic DNA, S\u00e9minire IRSET, Rennes, mars 2023 <\/li>\n<li> D. Lavenier, Data Storage on DNA, Invited Speaker, <a href=\"https:\/\/ida-2022.org\/\">IDA 2022<\/a>, Symposium on Intelligent Data Analysis, 20-22 April 2022, Rennes, France<\/li>\n<li> D. Lavenier, Stockage d&#8217;information sur ADN, S\u00e9minaires IBNM (Institut Brestois du Num\u00e9rique et des Math\u00e9matiques), 18 novembre 2021, Brest, France<\/li>\n<li> D. Lavenier, Le projet dnarXiv : archivage de l&#8217;information sur ADN, Colloque ADN, polym\u00e8res et big data, 26 octobre 2020, Paris, France<\/li>\n<\/ul>\n<h3>Reports<\/h3>\n<ul>\n<li>D. Lavenier, Constrained Consensus Sequence Algorithm for DNA Archiving, <a href=\"http:\/\/arxiv.org\/abs\/2105.04993\">arXiv<\/a>, May 2021<\/li>\n<li> A. Badoual, Stockage d&#8217;information sur ADN, Rapport stage M1, Univ. Rennes 1, Juin 2019 (<a href=\"https:\/\/project.inria.fr\/dnarxiv\/files\/2020\/10\/rapport_Ariane_Badoual_Stockage_ADN.pdf\">rapport<\/a>)<\/li>\n<li> B. Hamoum, Syst\u00e8mes de stockage de donn\u00e9es sur ADN, Rapport stage M2, UBS, Juin 2019 (<a href=\"https:\/\/project.inria.fr\/dnarxiv\/files\/2020\/10\/rapport_de_stage_M2_SESI_Belaid_Hamoum.pdf\">rapport<\/a>)<\/li>\n<\/ul>\n<h3>Posters<\/h3>\n<ul>\n<li> J. Leblanc, D. Lavenier, O. Boull\u00e9, Y. Audic, G. Andrade-Barosso, DNAmaker: High-Throughput Automated Construction of Multi-Kilobase DNA Molecules for Digital Data, MoleculArXiv Autumn School, IESC Carg\u00e8se, Corse, 2025 (<a href=\"https:\/\/project.inria.fr\/dnarxiv\/files\/2025\/11\/Poster_WorkShop_Corse_DNAmaker_V1-1.pdf\">Poster<\/a>)\n<li> O. Boull\u00e9, F. De Moor, J. Leblanc, D. Lavenier, De Bruijn Graph Partitioning for Scalable and accurate DNA Storage Processing, MoleculArXiv Autumn School, IESC Carg\u00e8se, Corse, 2025 (<a href=\"https:\/\/project.inria.fr\/dnarxiv\/files\/2025\/11\/Poster_Olivier_Corse.pdf\">Poster<\/a>) <\/li>\n<li> C. Berton,  G. Coatrieux,  D. Lavenier,  Secure data storage into DNA molecules compliant with biological constraints. Ensuring the confidentiality of data stored into DNA molecules, Journ\u00e9es RITS, Recherche en Imagerie et Technologies pour la Sant\u00e9, Brest, Mai 2022  (<a href=\"https:\/\/project.inria.fr\/dnarxiv\/files\/2022\/05\/poster_RITS_berton_coatrieux_lavenier.pdf\">Poster<\/a>)<\/li>\n<li> C. Berton, G. Coatrieux, D. Lavenier, Secure data storage into DNA molecules compliant with biological constraints, Colloque gestion de crise et num\u00e9rique : nouvelles menaces et nouvelles solutions, mars 2022, IMT, Palaiseau (<a href=\"https:\/\/project.inria.fr\/dnarxiv\/files\/2022\/03\/colloque_imt.pdf\">Poster<\/a>)<\/li>\n<li> L. Conde-Canencia, B. Hamoum, D. Lavenier, Error Correction Schmes for DNA Storage with Nanopore Sequencing, JOBIM 2019, Jul. 2019, Nantes (<a href=\"https:\/\/project.inria.fr\/dnarxiv\/files\/2020\/10\/jobim_2019.pdf\">abstract<\/a>)<\/li>\n<li> L. Conde-Canencia, B. Hamoum, D. Lavenier, E. Roux, Advanced Coding Schemes for DNA-based storage using nanopore sequencing technologies, CominLabs days, Nov. 2019, (<a href=\"https:\/\/project.inria.fr\/dnarxiv\/files\/2020\/10\/DNA-Storage.pdf\">Poster<\/a>)<\/li>\n<\/ul>\n<h3>Popularisation article<\/h3>\n<ul>\n<li>D. Lavenier, M. Antonini, A. Genot, Y. Rondelez, Stocker les donn\u00e9es : la piste prometteuse de l\u2019ADN, <a href=\"https:\/\/interstices.info\/stocker-les-donnees-la-piste-prometteuse-de-ladn\/?mtm_campaign=Le%20Fil%20scientifique%20%E2%80%93%20janvier%202023&amp;mtm_kwd=stockage%20sur%20ADN\">Interstices<\/a>, Janvier 2023<\/li>\n<li> D. Lavenier, M. Antonini. Stockage d\u2019information sur ADN. Le calcul \u00e0 d\u00e9couvert, CNRS<br \/>\nEditions, 2025, 978-2-271-15373-9 (<a href=\"https:\/\/hal.science\/hal-05376118\/document\">link<\/a>)\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>Journals F. De Moor, O. Boull\u00e9, D. Lavenier, De-Bruijn graph partitioning for scalable and accurate DNA storage processing, Bioinformatics, Volume 41, Issue 11, November 2025,\u2026<\/p>\n<p> <a class=\"continue-reading-link\" href=\"https:\/\/project.inria.fr\/dnarxiv\/publications-2\/\"><span>Continue reading<\/span><i class=\"crycon-right-dir\"><\/i><\/a> <\/p>\n","protected":false},"author":1754,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-71","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/project.inria.fr\/dnarxiv\/wp-json\/wp\/v2\/pages\/71","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/project.inria.fr\/dnarxiv\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/project.inria.fr\/dnarxiv\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/project.inria.fr\/dnarxiv\/wp-json\/wp\/v2\/users\/1754"}],"replies":[{"embeddable":true,"href":"https:\/\/project.inria.fr\/dnarxiv\/wp-json\/wp\/v2\/comments?post=71"}],"version-history":[{"count":61,"href":"https:\/\/project.inria.fr\/dnarxiv\/wp-json\/wp\/v2\/pages\/71\/revisions"}],"predecessor-version":[{"id":386,"href":"https:\/\/project.inria.fr\/dnarxiv\/wp-json\/wp\/v2\/pages\/71\/revisions\/386"}],"wp:attachment":[{"href":"https:\/\/project.inria.fr\/dnarxiv\/wp-json\/wp\/v2\/media?parent=71"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}