{"id":434,"date":"2017-05-22T15:42:50","date_gmt":"2017-05-22T13:42:50","guid":{"rendered":"http:\/\/project.inria.fr\/jobim2017\/?page_id=434"},"modified":"2017-07-03T11:17:09","modified_gmt":"2017-07-03T09:17:09","slug":"programme-2","status":"publish","type":"page","link":"https:\/\/project.inria.fr\/jobim2017\/programme-2\/","title":{"rendered":"Program"},"content":{"rendered":"

<\/p>\n

PDF version<\/a><\/p>\n

Posters<\/a><\/p>\n

Proceedings<\/a><\/p>\n

<\/p>\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
Monday, July 3<\/td>\n<\/tr>\n
13:00<\/td>\nRegistration<\/td>\n\u00a0<\/td>\n<\/tr>\n
14:00-14:30<\/td>\nWelcome<\/td>\n\u00a0<\/td>\n<\/tr>\n
14:30-15:30<\/td>\nPatrick Wincker<\/td>\nKeynote – Pasteur<\/td>\n<\/tr>\n
\u00a0<\/td>\nHolistic metagenomics in marine plankton communities<\/td>\n<\/tr>\n
15:30-16:30<\/td>\nMetagenomics<\/td>\nPlenary – Pasteur<\/td>\n<\/tr>\n
\u00a0<\/td>\nSimka: Large Scale De Novo Comparative Metagenomics<\/td>\n<\/tr>\n
\u00a0<\/td>\nGa\u00ebtan Benoit, Pierre Peterlongo, Mahendra Mariadassou, Erwan Drezen, Sophie Schbath, Dominique Lavenier and Claire Lemaitre<\/td>\n<\/tr>\n
\u00a0<\/td>\nFood-Microbiomes Transfert, a Shotgun Metagenomic Tool and a Database to Analyze Cheese Ecosystems<\/td>\n<\/tr>\n
\u00a0<\/td>\nThibaut Guirimand, Anne-Laure Abraham, Sandra Derozier, Charlie Pauvert, Mahendra Mariadassou, Valentin Loux and Pierre Renault<\/td>\n<\/tr>\n
\u00a0<\/td>\nReconstruction of Full-Length 16S rRNA Sequences for Taxonomic Assignment in Metagenomics<\/td>\n<\/tr>\n
\u00a0<\/td>\nPierre Pericard, Yoann Dufresne, Samuel Blanquart and H\u00e9l\u00e8ne Touzet<\/td>\n<\/tr>\n
16:30-17:00<\/td>\nBreak<\/td>\n\u00a0<\/td>\n<\/tr>\n
17:00-18:00<\/td>\nIntegrative Biology<\/td>\nPlenary – Pasteur<\/td>\n<\/tr>\n
\u00a0<\/td>\nFEELnc: an Alignment-Free Tool for Long Non-Coding RNAs Annotation<\/td>\n<\/tr>\n
\u00a0<\/td>\nValentin Wucher, Fabrice Legeai, Beno\u00eet H\u00e9dan, Guillaume Rizk, Laetitia Lagoutte, Edouard Cadieu, Audrey David, Nadine Botherel, C\u00e9line Le B\u00e9guec, Catherine Andr\u00e9, Christophe Hitte and Thomas Derrien<\/td>\n<\/tr>\n
\u00a0<\/td>\nAnalyse int\u00e9grative des ARN longs non-codant (lncRNAs) du g\u00e9nome canin<\/td>\n<\/tr>\n
\u00a0<\/td>\nC\u00e9line Le B\u00e9guec, Valentin Wucher, Laetitia Lagoutte, Edouard Cadieu, Beno\u00eet H\u00e9dan, Catherine Andr\u00e9, Christophe Hitte and Thomas Derrien<\/td>\n<\/tr>\n
\u00a0<\/td>\nAnalysis, Integration and Modeling of Cell Clustering Results in High-Dimensional Cytometry Data<\/td>\n<\/tr>\n
\u00a0<\/td>\nGuillaume Gautreau, David Pejoski, Roger Le Grand, Antonio Cosma, Anne-Sophie Beignon and Nicolas Tchitchek<\/td>\n<\/tr>\n
18:00-18:30<\/td>\nJeBiF \/ bioinfo-fr.net \/ Bioinfuse<\/td>\n\u00a0<\/td>\n<\/tr>\n
\u00a0<\/td>\n\u00a0<\/td>\n\u00a0<\/td>\n<\/tr>\n
\u00a0<\/td>\n\u00a0<\/td>\n\u00a0<\/td>\n<\/tr>\n<\/table>\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
Tuesday, July 4<\/td>\n<\/tr>\n
9:00-10:00<\/td>\nTobias Marschall [abstract]<\/a><\/td>\nKeynote – Pasteur<\/td>\n<\/tr>\n
\u00a0<\/td>\nA Guided Tour to Computational Haplotyping<\/td>\n<\/tr>\n
10:00-10:40<\/td>\nHigh Throughput Sequencing<\/td>\nPlenary – Pasteur<\/td>\n<\/tr>\n
\u00a0<\/td>\nGenomeOnRails: Depicting Microbial Species Diversity Via a Pangenome Graph<\/td>\n<\/tr>\n
\u00a0<\/td>\nGuillaume Gautreau, R\u00e9mi Planel, Amandine Perrin, Marie Touchon, Eduardo Rocha, Christophe Ambroise, Catherine Matias, St\u00e9phane Cruveiller, Claudine M\u00e9digue and David Vallenet<\/td>\n<\/tr>\n
\u00a0<\/td>\nAssembly of Heterozygous Genomes Using High-Order de Bruijn Graphs<\/td>\n<\/tr>\n
\u00a0<\/td>\nAntoine Limasset, Camille Marchet, Pierre Peterlongo and Jean-Francois Flot<\/td>\n<\/tr>\n
10:40-11:05<\/td>\nBreak<\/td>\n\u00a0<\/td>\n<\/tr>\n
11:05-11:25<\/td>\nProteomics<\/td>\nPlenary – Pasteur<\/td>\n<\/tr>\n
\u00a0<\/td>\nRapid Spectra Comparison with Data-Mining Algorithms: Accessing Post-Translational Modification Profiles on a sample scale<\/td>\n<\/tr>\n
\u00a0<\/td>\nMatthieu David, Guillaume Fertin, H\u00e9l\u00e8ne Rogniaux and Dominique Tessier<\/td>\n<\/tr>\n
11:25-12:40<\/td>\nPosters (odd numbers)<\/td>\n\u00a0<\/td>\n<\/tr>\n
12:40-13:40<\/td>\nLunch<\/td>\n\u00a0<\/td>\n<\/tr>\n
13:40-14:40<\/td>\nJulio Saez-Rodriguez [abstract]<\/a><\/td>\nKeynote – Pasteur<\/td>\n<\/tr>\n
\u00a0<\/td>\nNetwork Models to Understand and Combat Cancer: from Clinical Genomics to Biochemical Modelling<\/td>\n<\/tr>\n
14:40-15:40<\/td>\nSystems biology<\/td>\nPlenary – Pasteur<\/td>\n<\/tr>\n
\u00a0<\/td>\nRare and Common Epilepsies Converge on a Shared Gene Regulatory Network Providing Opportunities for Novel Antiepileptic Drug Discovery<\/td>\n<\/tr>\n
\u00a0<\/td>\nAndr\u00e9e Delahaye-Duriez, Prashant Srivastava, Kirill Shkura, Sarah R. Langley, Liisi Laaniste, Aida Moreno-Moral, B\u00e9n\u00e9dicte Danis, Manuela Mazzuferi, Patrik Foerch, Elena Gazina, Kay Richards, Steven Petrou, Rafal Kaminski, Enrico Petretto and Michael R. Johnson<\/td>\n<\/tr>\n
\u00a0<\/td>\nPrediction of Disease-associated Genes by advanced Random Walk with Restart on Multiplex and Heterogeneous Biological Networks<\/td>\n<\/tr>\n
\u00a0<\/td>\nAlberto Valdeolivas, Elisabeth Remy, Laurent Tichit, Ga\u00eblle Odelin, Claire Navarro, Sophie Perrin, Pierre Cau, Nicolas Levy and Ana\u00efs Baudot<\/td>\n<\/tr>\n
💻<\/span> <\/td>\nCRCmapper: Models of Core Transcriptional Regulatory Circuitries<\/td>\n<\/tr>\n
\u00a0<\/td>\nViolaine Saint-Andr\u00e9, Alexender J. Federation, Charles Y. Lin, Brian J. Abraham, Jessica Reddy, Tong Ihn Lee, James E. Bradner and Richard A. Young<\/td>\n<\/tr>\n
15:40-16:05<\/td>\nBreak<\/td>\n\u00a0<\/td>\n<\/tr>\n
16:05-17:45<\/td>\nSystems biology<\/td>\nParallel 1\/2 – Matisse<\/td>\n<\/tr>\n
\u00a0<\/td>\nNetwork Inference of Dynamic Models by the Combination of Spanning Arborescences<\/td>\n<\/tr>\n
\u00a0<\/td>\nAnthony Coutant and C\u00e9line Rouveirol<\/td>\n<\/tr>\n
💻<\/span>\u00a0<\/td>\nLong-term Tracking of Budding Yeast Cells with CellStar<\/td>\n<\/tr>\n
\u00a0<\/td>\nCristian Versari, Szymon Stoma, Kirill Batmanov, Art\u00e9mis Llamosi, Filip Mroz, Adam Kaczmarek, Matt Deyell, C\u00e9dric Lhoussaine, Pascal Hersen and Gregory Batt<\/td>\n<\/tr>\n
\u00a0💻<\/span><\/td>\nListeriomics: A Multi-Omics Interactive Web Platform for Systems Biology of the Model Pathogen Listeria<\/td>\n<\/tr>\n
\u00a0<\/td>\nChristophe Becavin, Mikael Koutero, Nicolas Tchitchek, Franck Cerutti, Pierre Lechat, Nicolas Maillet, Claire Hoede, H\u00e9l\u00e8ne Chiapello, Christine Gaspin and Pascale Cossart<\/td>\n<\/tr>\n
💻<\/span>\u00a0<\/td>\nAskOmics, a Web Tool to Integrate and Query Biological Data Using Semantic Web Technologies<\/td>\n<\/tr>\n
\u00a0<\/td>\nXavier Garnier, Anthony Bretaudeau, Olivier Filangi, Fabrice Legeai, Anne Siegel and Olivier Dameron<\/td>\n<\/tr>\n
\u00a0💻<\/span><\/td>\nRegulatory and Signaling Network Assembly through Linked Open Data<\/td>\n<\/tr>\n
\u00a0<\/td>\nMarie Lefebvre, J\u00e9r\u00e9mie Bourdon, Carito Guziolowski and Alban Gaignard<\/td>\n<\/tr>\n
16:05-17:45<\/td>\nSoftware Development and Workflows<\/td>\nParallel 2\/2 – Pasteur<\/td>\n<\/tr>\n
\u00a0<\/td>\nScientific Workflows for Computational Reproducibility in the Life Sciences: Status, Challenges and Opportunities<\/td>\n<\/tr>\n
\u00a0<\/td>\nSarah Cohen-Boulakia, Khalid Belhajjame, Olivier Collin, J\u00e9r\u00f4me Chopard, Christine Froidevaux, Alban Gaignard, Konrad Hinsen, Pierre Larmande, Yvan Le Bras, Fr\u00e9d\u00e9ric Lemoine, Fabien Mareuil, Herv\u00e9 M\u00e9nager, Christophe Pradal and Christophe Blanchet<\/td>\n<\/tr>\n
\u00a0💻<\/span><\/td>\nSequanix: A Dynamic Graphical Interface for Snakemake Workflows<\/td>\n<\/tr>\n
\u00a0<\/td>\nDimitri Desvillechabrol, Rachel Legendre, Christiane Bouchier, Sean Kennedy and Thomas Cokelaer<\/td>\n<\/tr>\n
\u00a0💻<\/span><\/td>\nBiosphere Web : un portail haut niveau pour une utilisation bioinformatique des clouds<\/td>\n<\/tr>\n
\u00a0<\/td>\nBryan Brancotte, Mohamed Bedri, Jonathan Lorenzo, Sandrine Perrin, Fr\u00e9d\u00e9ric S\u00e9n\u00e9, Awa Sepou Nga\u00eflo, Christophe Blanchet and Jean-Fran\u00e7ois Gibrat<\/td>\n<\/tr>\n
💻<\/span>\u00a0<\/td>\nBiodjango, an Open Framework for Bioinformatics Publishing<\/td>\n<\/tr>\n
\u00a0<\/td>\nEnnys Gheyouche and St\u00e9phane T\u00e9letch\u00e9a<\/td>\n<\/tr>\n
💻<\/span>\u00a0<\/td>\nNew Generation Phylogeny.fr: Refactoring Phylogeny.fr for Innovative Phylogenetic Services<\/td>\n<\/tr>\n
\u00a0<\/td>\nDamien Correia, Vincent Lefort, Olivia Doppelt-Azeroual, Fabien Mareuil, Sarah Cohen-Boulakia and OlivierGascuel<\/td>\n<\/tr>\n
18:00<\/td>\nSocial events<\/td>\n\u00a0<\/td>\n<\/tr>\n<\/table>\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
Wednesday, July 5<\/td>\n<\/tr>\n
9:00-10:00<\/td>\nFranca Fraternali [abstract]<\/a><\/td>\nKeynote – Pasteur<\/td>\n<\/tr>\n
\u00a0<\/td>\nUnraveling the Good and the Bad in Protein Networks: Functional versus Dysfunctional Interactions<\/td>\n<\/tr>\n
10:00-10:40<\/td>\nHigh Throughput Sequencing<\/td>\nParallel 1\/2 – Matisse<\/td>\n<\/tr>\n
\u00a0<\/td>\nHG-CoLoR: Hybrid Graph for the error Correction of Long Reads<\/td>\n<\/tr>\n
\u00a0<\/td>\nPierre Morisse, Thierry Lecroq and Arnaud Lefebvre<\/td>\n<\/tr>\n
💻<\/span>\u00a0<\/td>\nPhylOligo: a Package to Identify Contaminant or Untargeted Organism Sequences in Genome Assemblies<\/td>\n<\/tr>\n
\u00a0<\/td>\nLudovic Mallet, Tristan Bitard-Feildel, Franck Cerutti and H\u00e9l\u00e8ne Chiapello<\/td>\n<\/tr>\n
10:00-10:40<\/td>\nProteins<\/td>\nParallel 2\/2 – Pasteur<\/td>\n<\/tr>\n
\u00a0<\/td>\nUse of Cross-Docking Simulations for Identification of Protein-Protein Interactions Sites: The Case of Proteins with Multiple Binding Sites<\/td>\n<\/tr>\n
\u00a0<\/td>\nNathalie Lagarde, Lydie Vamparys, Benoist Laurent, Alessandra Carbone and Sophie Sacquin-Mora<\/td>\n<\/tr>\n
\u00a0<\/td>\nIn silico developments for the study of glycosylation applied to extracellular matrix proteins<\/td>\n<\/tr>\n
\u00a0<\/td>\nCamille Besan\u00e7on, Alexandre Guillot, S\u00e9bastien Blaise, Manuel Dauchez, Jessica Jonquet, Nicolas Belloy and St\u00e9phanie Baud<\/td>\n<\/tr>\n
10:40-11:05<\/td>\nBreak<\/td>\n\u00a0<\/td>\n<\/tr>\n
11:05-11:45<\/td>\nGenome visualization<\/td>\nParallel 1\/2 – Matisse<\/td>\n<\/tr>\n
💻<\/span>\u00a0<\/td>\nDynamix: Dynamic Visualization by Automatic Selection of Informative Tracks from Hundreds of Genomic Data Sets<\/td>\n<\/tr>\n
\u00a0<\/td>\nMatthias Monfort, Eileen Furlong and Charles Girardot<\/td>\n<\/tr>\n
💻<\/span>\u00a0<\/td>\nGeneSpy, a Simple Tool to Explore Genomic Context<\/td>\n<\/tr>\n
\u00a0<\/td>\nPierre Simon Garcia, Fr\u00e9d\u00e9ric Jauffrit, Christophe Grangeasse and C\u00e9line Brochier-Armanet<\/td>\n<\/tr>\n
11:05-11:45<\/td>\nHigh Throughput Sequencing<\/td>\nParallel 2\/2 – Pasteur<\/td>\n<\/tr>\n
💻<\/span>\u00a0<\/td>\nMCXpress: An R Package for Functional Interpretation of Single Cell RNA-Seq Data Using Multivariate Analysis<\/td>\n<\/tr>\n
\u00a0<\/td>\nAkira Cortal and Antonio Rausell<\/td>\n<\/tr>\n
💻<\/span>\u00a0<\/td>\nDeciphering the Functional Effects of Genetic Variation with UniProt Annotations<\/td>\n<\/tr>\n
\u00a0<\/td>\nBenoit Bely, Andrew Nightingale and Maria Martin<\/td>\n<\/tr>\n
11:45-12:50<\/td>\nPosters (even numbers)<\/td>\n\u00a0<\/td>\n<\/tr>\n
12:50-13:50<\/td>\nLunch<\/td>\n\u00a0<\/td>\n<\/tr>\n
13:50-14:50<\/td>\nJohn Huelsenbeck [abstract]<\/a><\/td>\nKeynote – Pasteur<\/td>\n<\/tr>\n
\u00a0<\/td>\nBayesian inference in phylogeny for genome-scale data<\/td>\n<\/tr>\n
14:50-15:50<\/td>\nPhylogeny<\/td>\nPlenary – Pasteur<\/td>\n<\/tr>\n
\u00a0<\/td>\nExtreme Halophilic Archaea Derive from Two Distinct Methanogen Class II Ancestors<\/td>\n<\/tr>\n
\u00a0<\/td>\nMonique Aouad, Najwa Taib, Anne Oudart, Michel Lecocq, Manolo Gouy and C\u00e9line Brochier-Armanet<\/td>\n<\/tr>\n
\u00a0<\/td>\nOrigin and Evolution of Multiple Haem Copper Oxidases in Archaea<\/td>\n<\/tr>\n
\u00a0<\/td>\nAnne Oudart, Simonetta Gribaldo and C\u00e9line Brochier-Armanet<\/td>\n<\/tr>\n
💻<\/span>\u00a0<\/td>\nGenomicus \u2013 New tools for Comparative Genomics and Evolution in Eukaryotes<\/td>\n<\/tr>\n
\u00a0<\/td>\nAlexandra Louis, Nga Thi Thuy Nguyen and Hugues Roest Crollius<\/td>\n<\/tr>\n
15:50-16:15<\/td>\nBreak<\/td>\n\u00a0<\/td>\n<\/tr>\n
16:15-17:15<\/td>\nSFBI \u2013 assembl\u00e9e g\u00e9n\u00e9rale<\/td>\n\u00a0<\/td>\n<\/tr>\n
17:15-17:45<\/td>\nGdR BIM (BioInformatique Mol\u00e9culaire) \u2013 assembl\u00e9e g\u00e9n\u00e9rale<\/td>\n<\/tr>\n
17:45-18:15<\/td>\nIFB (Institut Fran\u00e7ais de Bioinformatique)<\/td>\n\u00a0<\/td>\n<\/tr>\n
18:30<\/td>\nBus departure for the Gala Dinner<\/td>\n\u00a0<\/td>\n<\/tr>\n
19:00-23:55<\/td>\nGala Dinner<\/td>\n\u00a0<\/td>\n<\/tr>\n<\/table>\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
Thursday, July 6<\/td>\n<\/tr>\n
9:00-10:00<\/td>\nC\u00e9line Brochier [abstract]<\/a><\/td>\nKeynote – Pasteur<\/td>\n<\/tr>\n
\u00a0<\/td>\nThe growing tree of Archaea: changing perspectives on the diversity and evolution of the third domain of life<\/td>\n<\/tr>\n
10:00-10:40<\/td>\nIntegrative Biology<\/td>\nPlenary – Pasteur<\/td>\n<\/tr>\n
\u00a0<\/td>\nProbing Factor-Dependent Long-Range Contacts Using Regression with Higher-Order Interaction Terms<\/td>\n<\/tr>\n
\u00a0<\/td>\nRapha\u00ebl Mourad, Lang Li and Olivier Cuvier<\/td>\n<\/tr>\n
\u00a0<\/td>\nAn Integrative Approach for Predicting the RNA Secondary Structure for the HIV–1 Gag UTR Using Probing Data<\/td>\n<\/tr>\n
\u00a0<\/td>\nAfaf Saaidi, Yann Ponty and Bruno Sargueil.<\/td>\n<\/tr>\n
10:40-11:10<\/td>\nBreak<\/td>\n\u00a0<\/td>\n<\/tr>\n
11:10-11:50<\/td>\nIntegrative Biology<\/td>\nPlenary – Pasteur<\/td>\n<\/tr>\n
\u00a0<\/td>\nNCBoost: a machine-learning method to detect disease-causing non-coding variants<\/td>\n<\/tr>\n
\u00a0<\/td>\nBarthelemy Caron and Antonio Rausell<\/td>\n<\/tr>\n
\u00a0<\/td>\nContext-Specific Prioritization of Non-Coding Variants Implicated in Human Diseases<\/td>\n<\/tr>\n
\u00a0<\/td>\nLambert Moyon, Yves Cl\u00e9ment, Camille Berthelot and Hugues Roest Crollius<\/td>\n<\/tr>\n
11:50-12:30<\/td>\n<\/td>\nAnnonce RECOMB 2018 (Paris)<\/td>\nPlenary – Pasteur<\/td>\n<\/tr>\n
\nPrix SFBI<\/td>\n\u00a0<\/td>\n<\/tr>\n
\u00a0<\/td>\nAnnonce JOBIM 2018<\/td>\n\u00a0<\/td>\n<\/tr>\n
\u00a0<\/td>\nCl\u00f4ture<\/td>\n\u00a0<\/td>\n<\/tr>\n
\u00a0<\/td>\n\u00a0<\/td>\n\u00a0<\/td>\n<\/tr>\n
\u00a0<\/td>\n\u00a0<\/td>\n\u00a0<\/td>\n<\/tr>\n
\u00a0<\/td>\n\u00a0<\/td>\n\u00a0<\/td>\n<\/tr>\n
\u00a0<\/td>\n\u00a0<\/td>\n\u00a0<\/td>\n<\/tr>\n<\/table>\n

<\/p>","protected":false},"excerpt":{"rendered":"

PDF version Posters Proceedings Monday, July 3 13:00 Registration \u00a0 14:00-14:30 Welcome \u00a0 14:30-15:30 Patrick Wincker Keynote – Pasteur \u00a0 Holistic metagenomics in marine plankton communities 15:30-16:30 Metagenomics Plenary – Pasteur \u00a0 Simka: Large Scale De Novo Comparative Metagenomics \u00a0 Ga\u00ebtan Benoit, Pierre Peterlongo, Mahendra Mariadassou, Erwan Drezen, Sophie Schbath,\u2026<\/p>\n

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