{"id":334,"date":"2019-10-14T14:58:05","date_gmt":"2019-10-14T12:58:05","guid":{"rendered":"https:\/\/project.inria.fr\/neuromarkers\/?page_id=334"},"modified":"2022-05-04T08:08:14","modified_gmt":"2022-05-04T06:08:14","slug":"publication","status":"publish","type":"page","link":"https:\/\/project.inria.fr\/neuromarkers\/publication\/","title":{"rendered":"Publications"},"content":{"rendered":"<ul>\n<li>T\u00e9o Lemane, Paul Medvedev, Rayan Chikhi, Pierre Peterlongo, kmtricks: <a href=\"https:\/\/doi.org\/10.1093\/bioadv\/vbac029\">Efficient and flexible construction of Bloom filters for large sequencing data collections<\/a>,\u00a0<em>Bioinformatics Advances<\/em>, 2022;, vbac029.<\/li>\n<li>Giulia Bassignana, Jennifer Fransson, Vincent Henry, Olivier Colliot, Violetta Zujovic, et al.. <a href=\"https:\/\/hal.inria.fr\/hal-03022314\">Step-wise target controllability identifies dysregulated pathways of macrophage networks in multiple sclerosis.<\/a>\u00a0<i>Network Neuroscience<\/i>, MIT Press, 2021, 5 (2), pp.337-357.<\/li>\n<li>Vincent Henry, Ivan Moszer, Olivier Dameron, Laura Vila Xicota, Bruno Dubois, et al.. <a href=\"https:\/\/hal.archives-ouvertes.fr\/hal-03144306\">Converting disease maps into heavyweight ontologies: general methodology and application to Alzheimer\u2019s disease.<\/a>\u00a0<i>Database &#8211; The journal of Biological Databases and Curation<\/i>, Oxford University Press, 2021, pp.1-33.<\/li>\n<li>Ninon Burgos, Simona Bottani, Johann Faouzi, Elina Thibeau-Sutre, Olivier Colliot. <a href=\"https:\/\/hal.archives-ouvertes.fr\/hal-03070554\">Deep learning for brain disorders: from data processing to disease treatment.<\/a>\u00a0<i>Briefings in Bioinformatics<\/i>, Oxford University Press (OUP), 2021, 22 (2), pp.1560-1576.<\/li>\n<li>Johann Faouzi, Baptiste Couvy-Duchesne, Samir Bekadar, Olivier Colliot, Jean-Christophe Corvol. <a href=\"https:\/\/hal.archives-ouvertes.fr\/hal-03298502\">Exploratory analysis of the genetics of impulse control disorders in Parkinson&#8217;s disease using genetic risk scores.<\/a>\u00a0<i>Parkinsonism and Related Disorders<\/i>, Elsevier, 2021, 86, pp.74 &#8211; 77.<\/li>\n<li>Pascal Lu, Olivier Colliot. <a href=\"https:\/\/hal.inria.fr\/hal-03311509v2\">Multilevel Survival Modeling with Structured Penalties for Disease Prediction from Imaging Genetics data.<\/a>\u00a0<i>IEEE Journal of Biomedical and Health Informatics<\/i>, Institute of Electrical and Electronics Engineers, 2021, pp.1-1.<\/li>\n<li>Manon Ansart, St\u00e9phane Epelbaum, Giulia Bassignana, Alexandre B\u00f4ne, Simona Bottani, et al.. <a href=\"https:\/\/hal.archives-ouvertes.fr\/hal-02337815v2\">Predicting the Progression of Mild Cognitive Impairment Using Machine Learning: A Systematic, Quantitative and Critical Review.<\/a>\u00a0<i>Medical Image Analysis<\/i>, Elsevier, 2021, 67, pp.101848.<\/li>\n<li>Virgilio Kmetzsch, Vincent Anquetil, Dario Saracino, Daisy Rinaldi, Agn\u00e8s Camuzat, et al.. <a href=\"https:\/\/hal.inria.fr\/hal-03046771\">Plasma microRNA signature in presymptomatic and symptomatic subjects with C9orf72-associated frontotemporal dementia and amyotrophic lateral sclerosis.<\/a>\u00a0<i>Journal of Neurology, Neurosurgery and Psychiatry<\/i>, BMJ Publishing Group, 2020, 92 (5), pp.485-493<\/li>\n<li>Lydia Chougar, Johann Faouzi, Nadya Pyatigorskaya, Lydia Yahia\u2010cherif, Rahul Gaurav, et al.. <a href=\"https:\/\/hal.sorbonne-universite.fr\/hal-03046578v2\">Automated Categorization of Parkinsonian Syndromes Using Magnetic Resonance Imaging in a Clinical Setting.<\/a>\u00a0<i>Movement Disorders<\/i>, Wiley, 2020<\/li>\n<li>Giulia Bassignana, Olivier Colliot, Fabrizio de Vico Fallani. <a href=\"https:\/\/hal.inria.fr\/hal-03022301\">A step-wise criterion to determine target control centrality in the aging brain network.<\/a>\u00a0<i>NetSci 2020 &#8211; International School and Conference on Network Science<\/i>, Sep 2020, Rome \/ Virtual, Italy<\/li>\n<li><span lang=\"EN-US\">Vincent Henry,\u00a0Giulia Bassignana, Fabrizio De Vico Fallani, Olivier Dameron, Ivan Moszer,<\/span><span lang=\"EN-US\">\u00a0<\/span><span lang=\"EN-US\">and Olivier Colliot.<span class=\"apple-converted-space\">\u00a0<\/span><\/span><a href=\"https:\/\/hal.archives-ouvertes.fr\/hal-02301626\"><i><span lang=\"EN-US\">Conciliation of medicine systems disease maps and other molecular interaction networks using logical properties of ontology <\/span><\/i><\/a><span lang=\"EN-US\">.<span class=\"apple-converted-space\">\u00a0<\/span><i>4rd Disease Maps Community Meeting<\/i>, Oct 2019, Sevilla, Spain<\/span><\/li>\n<li>Johann Faouzi, Samir Bekadar, Olivier Colliot, and Jean-Christophe Corvol. <em><a href=\"https:\/\/hal.inria.fr\/hal-02315533\">Predicting Impulse Control Disorders in Parkinson&#8217;s Disease: A Challenging Task<\/a>. International Congress of Parkinson&#8217;s Disease and Movement Disorders, September 2019, Nice, France.<\/em><\/li>\n<li><span lang=\"EN-US\">Vincent Henry,\u00a0Giulia Bassignana, Fabrizio De Vico Fallani, Olivier Dameron, Ivan Moszer,<\/span><span lang=\"EN-US\">\u00a0<\/span><span lang=\"EN-US\">and Olivier Colliot.\u00a0<\/span><em><a href=\"https:\/\/hal.archives-ouvertes.fr\/hal-02301702\">Conciliation of process description and molecular interaction networks using logical properties of ontology.<\/a>\u00a0<i>Journ\u00e9es Ouvertes Biologie, Informatique et Math\u00e9matiques (JOBIM)<\/i>, Jul 2019, Nantes, France.<\/em><\/li>\n<li>Giulia Bassignana, Jennifer Fransson, Olivier Colliot, Violetta Zujovic and Fabrizio De Vico Fallani. <em><a href=\"https:\/\/hal.archives-ouvertes.fr\/hal-02314001\">Target controllability in genetic networks of macrophage activation<\/a>. International School and Conference on Network Science (NetSci), May 2019, Burlington, Vermont.<\/em><\/li>\n<li>Vincent Henry, Ivan Moszer, Olivier Dameron, Marie-Claude Potier, Martin Hofmann-Apitius, <em>et al<\/em>.. <a href=\"https:\/\/hal.archives-ouvertes.fr\/hal-01917742\">Converting Alzheimer\u2019s disease map into a heavyweight ontology: a formal network to integrate data<\/a>. <i>Data Integration in the Life Sciences (DILS2018)<\/i>, Nov 2018, Hannover, Germany<\/li>\n<li>Vincent Henry, Ivan Moszer, Olivier Dameron, Marie-Claude Potier, Martin Hofmann-Apitius, <em>et al<\/em>.. <a href=\"https:\/\/hal.archives-ouvertes.fr\/hal-01873474\">Integrating ontological representation and reasoning into a disease map: application to Alzheimer\u2019s disease<\/a>. <i>3rd Disease Maps Community Meeting<\/i>, Jun 2018, Paris, France<\/li>\n<li>Giulia Bassignana, Jennifer Fransson, Olivier Colliot, Violetta Zujovic, Fabrizio de Vico Fallani. <a href=\"https:\/\/hal.archives-ouvertes.fr\/hal-01967797\">Identification of Driver Nodes in Genetic Networks Regulating Macrophage Activation.<\/a>\u00a0<i>Conference on Complex Systems &#8211; CSS<\/i>, Sep 2018, Thessaloniki, Greece.<\/li>\n<li>Giulia Bassignana, Jennifer Fransson, Olivier Colliot, Violetta Zujovic and Fabrizio De Vico Fallani. <em><a href=\"https:\/\/hal.archives-ouvertes.fr\/hal-02315609\">Identification of driver nodes in genetic networks regulating macrophage activation.<\/a> International School and Conference on Network Science (NetSci), Jun 2018, Paris, France.<\/em><\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>T\u00e9o Lemane, Paul Medvedev, Rayan Chikhi, Pierre Peterlongo, kmtricks: Efficient and flexible construction of Bloom filters for large sequencing data collections,\u00a0Bioinformatics Advances, 2022;, vbac029. Giulia Bassignana, Jennifer Fransson, Vincent Henry, Olivier Colliot, Violetta Zujovic, et al.. Step-wise target controllability identifies dysregulated pathways of macrophage networks in multiple sclerosis.\u00a0Network Neuroscience, MIT\u2026<\/p>\n<p> <a class=\"continue-reading-link\" href=\"https:\/\/project.inria.fr\/neuromarkers\/publication\/\"><span>Continue reading<\/span><i class=\"crycon-right-dir\"><\/i><\/a> <\/p>\n","protected":false},"author":1311,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":"","_members_access_role":[],"_members_access_error":""},"class_list":["post-334","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/project.inria.fr\/neuromarkers\/wp-json\/wp\/v2\/pages\/334","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/project.inria.fr\/neuromarkers\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/project.inria.fr\/neuromarkers\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/project.inria.fr\/neuromarkers\/wp-json\/wp\/v2\/users\/1311"}],"replies":[{"embeddable":true,"href":"https:\/\/project.inria.fr\/neuromarkers\/wp-json\/wp\/v2\/comments?post=334"}],"version-history":[{"count":12,"href":"https:\/\/project.inria.fr\/neuromarkers\/wp-json\/wp\/v2\/pages\/334\/revisions"}],"predecessor-version":[{"id":388,"href":"https:\/\/project.inria.fr\/neuromarkers\/wp-json\/wp\/v2\/pages\/334\/revisions\/388"}],"wp:attachment":[{"href":"https:\/\/project.inria.fr\/neuromarkers\/wp-json\/wp\/v2\/media?parent=334"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}