{"id":1824,"date":"2015-03-13T11:48:08","date_gmt":"2015-03-13T10:48:08","guid":{"rendered":"https:\/\/project.inria.fr\/plasma-lab\/?page_id=1824"},"modified":"2015-03-13T11:49:35","modified_gmt":"2015-03-13T10:49:35","slug":"biological-language","status":"publish","type":"page","link":"https:\/\/project.inria.fr\/plasma-lab\/documentation\/languages\/biological-language\/","title":{"rendered":"Biological language"},"content":{"rendered":"

Here is the BNF grammar of our biological modeling language.<\/p>\n

\n

Important!<\/strong><\/p> Biological language grammar<\/p>\n

BIO ::=<\/div>\n
\n

[“constant” ConstantList]<\/p>\n

“species” SpeciesList<\/p>\n

ReactionList<\/p>\n<\/div>\n

ConstantList ::=<\/div>\n
ConstDecl [“,” ConstantList]<\/div>\n
ConstDecl ::=<\/div>\n
ident “=” Number<\/div>\n
SpeciesList ::=<\/div>\n
SpecDecl [“,” SpeciesList]<\/div>\n
SpecDecl ::=<\/div>\n
ident [ “=” integer]<\/div>\n
ReactionList ::=<\/div>\n
Reaction [ReactionList]<\/div>\n
Reaction ::=<\/div>\n
Reactants [RateConst] “->” Products<\/div>\n
Reactants ::=<\/div>\n
\n

“*”<\/p>\n

| Species [ “+” Species [“+” Species ]]<\/p>\n<\/div>\n

Species ::=<\/div>\n
ident<\/div>\n
Products ::=<\/div>\n
\n

“*”<\/p>\n

| Species {“+” Species}<\/p>\n<\/div>\n

RateConst ::=<\/div>\n
\n

Number<\/p>\n

| ident<\/p>\n<\/div>\n

Number ::=<\/div>\n
\n

integer<\/p>\n

| float<\/p>\n<\/div>\n

<\/div>\n<\/div>\n

<\/p>","protected":false},"excerpt":{"rendered":"

Here is the BNF grammar of our biological modeling language.<\/p>\n

Continue reading<\/span><\/i><\/a> <\/p>\n","protected":false},"author":235,"featured_media":0,"parent":234,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-1824","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/project.inria.fr\/plasma-lab\/wp-json\/wp\/v2\/pages\/1824","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/project.inria.fr\/plasma-lab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/project.inria.fr\/plasma-lab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/project.inria.fr\/plasma-lab\/wp-json\/wp\/v2\/users\/235"}],"replies":[{"embeddable":true,"href":"https:\/\/project.inria.fr\/plasma-lab\/wp-json\/wp\/v2\/comments?post=1824"}],"version-history":[{"count":3,"href":"https:\/\/project.inria.fr\/plasma-lab\/wp-json\/wp\/v2\/pages\/1824\/revisions"}],"predecessor-version":[{"id":1828,"href":"https:\/\/project.inria.fr\/plasma-lab\/wp-json\/wp\/v2\/pages\/1824\/revisions\/1828"}],"up":[{"embeddable":true,"href":"https:\/\/project.inria.fr\/plasma-lab\/wp-json\/wp\/v2\/pages\/234"}],"wp:attachment":[{"href":"https:\/\/project.inria.fr\/plasma-lab\/wp-json\/wp\/v2\/media?parent=1824"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}