{"id":403,"date":"2022-03-14T14:44:55","date_gmt":"2022-03-14T13:44:55","guid":{"rendered":"https:\/\/project.inria.fr\/shanoir\/?p=403"},"modified":"2022-03-14T14:44:55","modified_gmt":"2022-03-14T13:44:55","slug":"new-feature-bids-import","status":"publish","type":"post","link":"https:\/\/project.inria.fr\/shanoir\/new-feature-bids-import\/","title":{"rendered":"New feature: BIDS import"},"content":{"rendered":"

A previous feature in Shanoir allowed to export data as BIDS: https:\/\/project.inria.fr\/shanoir\/demonstration-bids-integration-in-shanoir\/<\/p>\n

It is now possible in Shanoir to import data from a BIDS folder, and therefore from raw nifti or other unsupported data type until now as IEEG.<\/p>\n

As BIDS folder are generally quite massive folder, we propose a single subject import: select a subject folder, compress it and load it into shanoir BIDS import, selecting a study and a center.<\/p>\n

\"\"<\/a><\/p>\n

1) Subject:<\/u>
The subject will be automatically created, based on the subject name. If a subject with the given name already exists in the study, use it.<\/p>\n

2) Examination:<\/u>
The examination will be automatically created based on examination comment.
Examination date will be gathered from sessions.tsv or scans.tsv files. If not existing, from the session folder creation date.<\/p>\n

3) Data type:<\/u>
The data type folder (anat, func, etc) will define the type of dataset created in Shanoir.<\/p>\n

4) Equipment<\/u>
The acquisition equipment will be automatically referenced from the json metadata files, if existing.
– “DeviceSerialNumber” will be used to check for a match in Shanoir database.
– If not existing, an “unknown” equipment will be used.<\/p>\n

Then the BIDS data will be imported and the\u00a0 generated BIDS tree will respect the original data organization:<\/p>\n

\"\"<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"

A previous feature in Shanoir allowed to export data as BIDS: https:\/\/project.inria.fr\/shanoir\/demonstration-bids-integration-in-shanoir\/ It is now possible in Shanoir to import data from a BIDS folder, and therefore from raw nifti or other unsupported data type until now as IEEG. As BIDS folder are generally quite massive folder, we propose a\u2026<\/p>\n

Continue reading<\/span><\/i><\/a> <\/p>\n","protected":false},"author":2088,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[1],"tags":[],"class_list":["post-403","post","type-post","status-publish","format-standard","hentry","category-uncategorized"],"_links":{"self":[{"href":"https:\/\/project.inria.fr\/shanoir\/wp-json\/wp\/v2\/posts\/403","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/project.inria.fr\/shanoir\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/project.inria.fr\/shanoir\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/project.inria.fr\/shanoir\/wp-json\/wp\/v2\/users\/2088"}],"replies":[{"embeddable":true,"href":"https:\/\/project.inria.fr\/shanoir\/wp-json\/wp\/v2\/comments?post=403"}],"version-history":[{"count":1,"href":"https:\/\/project.inria.fr\/shanoir\/wp-json\/wp\/v2\/posts\/403\/revisions"}],"predecessor-version":[{"id":408,"href":"https:\/\/project.inria.fr\/shanoir\/wp-json\/wp\/v2\/posts\/403\/revisions\/408"}],"wp:attachment":[{"href":"https:\/\/project.inria.fr\/shanoir\/wp-json\/wp\/v2\/media?parent=403"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/project.inria.fr\/shanoir\/wp-json\/wp\/v2\/categories?post=403"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/project.inria.fr\/shanoir\/wp-json\/wp\/v2\/tags?post=403"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}