{"id":490,"date":"2023-10-26T11:54:23","date_gmt":"2023-10-26T09:54:23","guid":{"rendered":"https:\/\/project.inria.fr\/shanoir\/?p=490"},"modified":"2024-01-24T16:46:59","modified_gmt":"2024-01-24T15:46:59","slug":"vip-dataset-processing-through-shanoir","status":"publish","type":"post","link":"https:\/\/project.inria.fr\/shanoir\/vip-dataset-processing-through-shanoir\/","title":{"rendered":"VIP dataset processing through Shanoir"},"content":{"rendered":"\n<p>VIP (Virtual Imaging Platform [<a href=\"https:\/\/vip.creatis.insa-lyon.fr\/\">vip.creatis.insa-lyon.fr<\/a>]) is a web portal for medical imaging applications. It allows access to scientific applications as a service, as well as distributed computing resources available in the biomed virtual organization of the EGI e-infrastructure.<\/p>\n\n\n\n<p>Shanoir now allow an authenticated user to process datasets on VIP platform pipelines. The resulting data is reintegrated into Shanoir as <em>processed datasets<\/em>.<\/p>\n\n\n\n<p>The following video demonstrate the use of this feature with the OFSEP Sequence Identifier pipeline, developped in the context of the RHU PRIMUS project (<a href=\"https:\/\/www.ofsep.org\/fr\/rhu-primus\">ofsep.org\/fr\/rhu-primus<\/a><a rel=\"noreferrer noopener\" href=\"https:\/\/www.youtube.com\/redirect?event=video_description&amp;redir_token=QUFFLUhqbURnRlpWNm0xMy1QSlNGVjhSdEVmUHFjdXhIUXxBQ3Jtc0ttMm5XaGNoYWkyZkhHbFppb1ZBaENNTGtZVm5qNk5GNEF4S2NLN3VUeEZPZmJuTjVkUi1KTFduTUpjRnVaMVJ1UWhVM2VUMEdORnMxSHFzOTJkbC1iVFZJamdIamVJQXJOQ1ZkNE8yY0gxb3AzaHNscw&amp;q=https%3A%2F%2Fwww.ofsep.org%2Ffr%2Frhu-primus%29&amp;v=_Lpb3Pvw6e8\" target=\"_blank\">)<\/a>.<\/p>\n\n\n\n<figure class=\"wp-block-embed is-type-video is-provider-youtube wp-block-embed-youtube wp-embed-aspect-16-9 wp-has-aspect-ratio\"><div class=\"wp-block-embed__wrapper\">\n<iframe loading=\"lazy\" title=\"Shanoir x VIP : The OFSEP Sequence Identifier use case\" width=\"900\" height=\"506\" src=\"https:\/\/www.youtube.com\/embed\/_Lpb3Pvw6e8?feature=oembed\" frameborder=\"0\" allow=\"accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture; web-share\" allowfullscreen><\/iframe>\n<\/div><\/figure>\n\n\n\n<p>See documentation on wiki : <a rel=\"noreferrer noopener\" href=\"https:\/\/github.com\/fli-iam\/shanoir-ng\/wiki\/VIP-processing-through-Shanoir\" target=\"_blank\">github.com\/fli-iam\/shanoir-ng\/wiki\/VIP-processing-through-Shanoir<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p>VIP (Virtual Imaging Platform [vip.creatis.insa-lyon.fr]) is a web portal for medical imaging applications. It allows access to scientific applications as a service, as well as distributed computing resources available in the biomed virtual organization of the EGI e-infrastructure. Shanoir now allow an authenticated user to process datasets on VIP platform\u2026<\/p>\n<p> <a class=\"continue-reading-link\" href=\"https:\/\/project.inria.fr\/shanoir\/vip-dataset-processing-through-shanoir\/\"><span>Continue reading<\/span><i class=\"crycon-right-dir\"><\/i><\/a> <\/p>\n","protected":false},"author":2346,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[8],"tags":[],"class_list":["post-490","post","type-post","status-publish","format-standard","hentry","category-feature"],"_links":{"self":[{"href":"https:\/\/project.inria.fr\/shanoir\/wp-json\/wp\/v2\/posts\/490","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/project.inria.fr\/shanoir\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/project.inria.fr\/shanoir\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/project.inria.fr\/shanoir\/wp-json\/wp\/v2\/users\/2346"}],"replies":[{"embeddable":true,"href":"https:\/\/project.inria.fr\/shanoir\/wp-json\/wp\/v2\/comments?post=490"}],"version-history":[{"count":7,"href":"https:\/\/project.inria.fr\/shanoir\/wp-json\/wp\/v2\/posts\/490\/revisions"}],"predecessor-version":[{"id":533,"href":"https:\/\/project.inria.fr\/shanoir\/wp-json\/wp\/v2\/posts\/490\/revisions\/533"}],"wp:attachment":[{"href":"https:\/\/project.inria.fr\/shanoir\/wp-json\/wp\/v2\/media?parent=490"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/project.inria.fr\/shanoir\/wp-json\/wp\/v2\/categories?post=490"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/project.inria.fr\/shanoir\/wp-json\/wp\/v2\/tags?post=490"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}