- Rand Asswad, Walid Djema, Olivier Bernard, Jean-Luc Gouzé, Eugenio Cinquemani (under review), Static and Dynamic Optimal Control of Vitamin-Mediated Algal-Bacterial Co-Cultures under Optogenetic Regulation, Journal paper.
- Rand Asswad, Jean-Luc Gouzé, Eugenio Cinquemani (2025). Single- and multi-objective performance optimization of an algal-bacterial synthetic process. CDC 2025 – 64rd IEEE Conference on Decision and Control, IEEE CSS, Dec 2025, Rio de Janeiro, Brazil, to appear. [Hal preprint]
- J. Innerarity Imizcoz, W. Djema, F. Mairet, J.-L. Gouzé (2025). Optimal control of a microbial growth model by means of substrate concentration and resource allocation. DYCOPS 2025 – 14th IFAC Symposium on Dynamics and Control of Process Systems, including Biosystems, 2025, Bratislava, Slovakia. pp.528-533, ⟨10.1016/j.ifacol.2025.07.200⟩ [Hal preprint]
- Javier Innerarity Imizcoz, Walid Djema, Francis Mairet, Jean-Luc Gouzé (2024). Optimal resource allocation in micro-organisms under periodic nutrient fluctuations. Journal of Theoretical Biology, 7:595:111953. [Hal preprint]
- Rand Asswad, Walid Djema, Olivier Bernard, Jean-Luc Gouzé, Eugenio Cinquemani (2024). Optimization of microalgae biosynthesis via controlled algal-bacterial symbiosis. CDC 2024 – 63rd IEEE Conference on Decision and Control, IEEE CSS, Dec 2024, Milan, Italy. pp.1-6. [Hal preprint]
- Javier Innerarity Imizcoz, Walid Djema, Francis Mairet, Jean-Luc Gouzé (2024). Optimal cell growth under periodic environment. MTNS 2024 – 26th International Symposium on Mathematical Theory of Networks and Systems, Aug 2024, Cambridge (Angleterre), United Kingdom. [Hal preprint]
- Rand Asswad, Eugenio Cinquemani, Jean-Luc Gouzé (2024). Kalman-based approaches for online estimation of bioreactor dynamics from fluorescent reporter measurements. ECC 2024 – European Control Conference, Jun 2024, Stockholm, Sweden. pp.1-6. [Hal preprint]
- Agustín Gabriel Yabo, Jean-Baptiste Caillau, Jean-Luc Gouzé (2024). Optimal bacterial resource allocation strategies in batch processing. SIAM Journal on Applied Mathematics, 2024, pp.S567-S591. [Hal preprint]
- Juan Carlos Arceo, Olivier Bernard, Jean-Luc Gouzé (2023). Observer Design via Non-Monotone Lyapunov Functions for Monitoring Heterotrophic Microalgae. 22nd IFAC World Congress, 2023, Yokohama, Japan. [Hal preprint]
- Carlos Martinez, Eugenio Cinquemani, Hidde de Jong, Jean-Luc Gouzé (2023). Optimal protein production by a synthetic microbial consortium: Coexistence, distribution of labor, and syntrophy. Journal of Mathematical Biology, 2023, 87 (1), pp.1-37. [Hal preprint]
- Bruno Assis Pessi, Caroline Baroukh, Anais Bacquet, Olivier Bernard (2023). A universal dynamical metabolic model representing mixotrophic growth of Chlorella sp. on wastes. Water Research, 2023, 229, pp.119388. [Hal preprint]
- Francesca Casagli, Olivier Bernard (2022). Simulating biotechnological processes affected by meteorology: Application to algae–bacteria systems. Journal of Cleaner Production, 2022, 377, pp.134190. [Hal preprint]
- Antrea Pavlou, Eugenio Cinquemani, Johannes Geiselmann, Hidde de Jong (2022). Maturation models of fluorescent proteins are necessary for unbiased estimates of promoter activity. Biophysical Journal, 2022, 121 (21), pp.4179-4188. [Hal preprint]