Publications

Journals

  • B. Hamoum and E. Dupraz, “Channel Model and Decoder With Memory for DNA Data Storage With Nanopore Sequencing,” in IEEE Access, vol. 11, pp. 52075-52087, 2023, doi: 10.1109/ACCESS.2023.3278975

Conferences

  • C. Berton, G. Coatrieu, D. Lavenier, S. Haddad, Dynamic sliding window encoding for data storage on DNA under biological and indexing constraints, EUSIPCO2023, 31st European Signal Processing Conference, Helsinki, Finland, September 2023
  • B. Hamoum, A. Ezzeddine, E. Dupraz, Synchronization algorithms from high-rate LDPC codes for DNA data storage, Rhodes, 24th International Conference on Digital Signal Processing, Island of Rhodes, Greece, June 2023.
  • D. Lavenier, DNA Storage: Synthesis and Sequencing Semiconductor Technologies, 68th Annual IEEE International Electron Devices Meeting, San Francisco, Dec. 2022 [HAL]
  • B. Hamoum, E. Dupraz, L. Conde-Canencia, A DNA Data Storage Channel Model Trained on Genomic Data with Nanopore Sequencing, DSMM 2022, 1st International Conference on Data Storage in Molecular Media, 21-23 March 2022, virtual conference [abstract][slides]
  • C. Berton, G. Coatrieux, D. Lavenier, A first proposal for secure data storage into DNA molecules compliant with biological constraints, DSMM 2022, 1st International Conference on Data Storage in Molecular Media, 21-23 March 2022, virtual conference [abstract] [slides]
  • O. Boullé, D. Lavenier, Experimental DNA storage platform, DSMM 2022, 1st International Conference on Data Storage in Molecular Media, 21-23 March 2022, virtual conference [abstract] [slides]
  • B. Hamoum, E. Dupraz, L. Conde-Canencia, D. Lavenier, Channel Model with Memory for DNA Data Storage with Nanopore Sequencing, 2021 11th International Symposium on Topics in Coding, ISTC 2021, HAL

PhD

  • Belaid HAMOUM, DNA data storage algorithms and synchronization, PhD Thesis, UBS, Dec. 15, 2022 (Document)

Talks

  • D. Lavenier, Data Storage on DNA, Invited Speaker, IDA 2022, Symposium on Intelligent Data Analysis, 20-22 April 2022, Rennes, France
  • D. Lavenier, Stockage d’information sur ADN, Séminaires IBNM (Institut Brestois du Numérique et des Mathématiques), 18 novembre 2021, Brest, France
  • D. Lavenier, Le projet dnarXiv : archivage de l’information sur ADN, Colloque ADN, polymères et big data, 26 octobre 2020, Paris, France

Reports

  • D. Lavenier, Constrained Consensus Sequence Algorithm for DNA Archiving, arXiv, May 2021
  • A. Badoual, Stockage d’information sur ADN, Rapport stage M1, Univ. Rennes 1, Juin 2019 (rapport)
  • B. Hamoum, Systèmes de stockage de données sur ADN, Rapport stage M2, UBS, Juin 2019 (rapport)

Posters

  • C. Berton, G. Coatrieux, D. Lavenier, Secure data storage into DNA molecules compliant with biological constraints. Ensuring the confidentiality of data stored into DNA molecules, Journées RITS, Recherche en Imagerie et Technologies pour la Santé, Brest, Mai 2022 (Poster)
  • C. Berton, G. Coatrieux, D. Lavenier, Secure data storage into DNA molecules compliant with biological constraints, Colloque gestion de crise et numérique : nouvelles menaces et nouvelles solutions, mars 2022, IMT, Palaiseau (Poster)
  • L. Conde-Canencia, B. Hamoum, D. Lavenier, Error Correction Schmes for DNA Storage with Nanopore Sequencing, JOBIM 2019, Jul. 2019, Nantes (abstract)
  • L. Conde-Canencia, B. Hamoum, D. Lavenier, E. Roux, Advanced Coding Schemes for DNA-based storage using nanopore sequencing technologies, CominLabs days, Nov. 2019, (Poster)

Popularisation article

  • D. Lavenier, M. Antonini, A. Genot, Y. Rondelez, Stocker les données : la piste prometteuse de l’ADN, Interstices, Janvier 2023

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