Exemples d’applications
Section bibliographique regroupant des exemples d’applications cliniques des méthodes de machine learning et de deep learning.
Machine learning
- Le Berre C, Sandborn WJ, Aridhi S, Devignes MD, Fournier L, Smaïl-Tabbone M, Danese S, Peyrin-Biroulet L. Application of Artificial Intelligence to Gastroenterology and Hepatology. Gastroenterology. 2020 Jan;158(1):76-94.e2. doi: 10.1053/j.gastro.2019.08.058. Epub 2019 Oct 5. PMID: 31593701.
- Duarte K, Monnez JM, Albuisson E. Sequential linear regression with online standardized data. PLoS One. 2018 Jan 18;13(1):e0191186. doi: 10.1371/journal.pone.0191186. PMID: 29346392; PMCID: PMC5773231.
- Grissa D, Pétéra M, Brandolini M, Napoli A, Comte B, Pujos-Guillot E. Feature Selection Methods for Early Predictive Biomarker Discovery Using Untargeted Metabolomic Data. Front Mol Biosci. 2016 Jul 8;3:30. doi: 10.3389/fmolb.2016.00030. PMID: 27458587; PMCID: PMC4937038.
- Silva I, Moody B, Behar J, Johnson A, Oster J, Clifford GD, Moody GB. Robust detection of heart beats in multimodal data. Physiol Meas. 2015 Aug;36(8):1629-44. doi: 10.1088/0967-3334/36/8/1629. Epub 2015 Jul 28. PMID: 26217894; PMCID: PMC4668947.
- Olivera P, Danese S, Jay N, Natoli G, Peyrin-Biroulet L. Big data in IBD: a look into the future. Nat Rev Gastroenterol Hepatol. 2019 May;16(5):312-321. doi: 10.1038/s41575-019-0102-5. PMID: 30659247.
- Coulet A, Shah NH, Wack M, Chawki MB, Jay N, Dumontier M. Predicting the need for a reduced drug dose, at first prescription. Sci Rep. 2018 Oct 22;8(1):15558. doi: 10.1038/s41598-018-33980-0. PMID: 30349060; PMCID: PMC6197198.
- Burgos N, Colliot O. Machine learning for classification and prediction of brain diseases: recent advances and upcoming challenges. Curr Opin Neurol. 2020 Aug;33(4):439-450. doi: 10.1097/WCO.0000000000000838. PMID: 32657885.
Deep learning
- Hassabis D, Kumaran D, Summerfield C, Botvinick M. Neuroscience-Inspired Artificial Intelligence. Neuron. 2017 Jul 19;95(2):245-258. doi: 10.1016/j.neuron.2017.06.011. PMID: 28728020.
- Putin E, Asadulaev A, Vanhaelen Q, Ivanenkov Y, Aladinskaya AV, Aliper A, Zhavoronkov A. Adversarial Threshold Neural Computer for Molecular de Novo Design. Mol Pharm. 2018 Oct 1;15(10):4386-4397. doi: 10.1021/acs.molpharmaceut.7b01137. Epub 2018 Mar 30. PMID: 29569445.
- Zhuang X, Li L, Payer C, Štern D, Urschler M, Heinrich MP, Oster J, Wang C, Smedby Ö, Bian C, Yang X, Heng PA, Mortazi A, Bagci U, Yang G, Sun C, Galisot G, Ramel JY, Brouard T, Tong Q, Si W, Liao X, Zeng G, Shi Z, Zheng G, Wang C, MacGillivray T, Newby D, Rhode K, Ourselin S, Mohiaddin R, Keegan J, Firmin D, Yang G. Evaluation of algorithms for Multi-Modality Whole Heart Segmentation: An open-access grand challenge. Med Image Anal. 2019 Dec;58:101537. doi: 10.1016/j.media.2019.101537. Epub 2019 Aug 1. PMID: 31446280; PMCID: PMC6839613.
- Lassau N, Ammari S, Chouzenoux E, Gortais H, Herent P, Devilder M, Soliman S, Meyrignac O, Talabard MP, Lamarque JP, Dubois R, Loiseau N, Trichelair P, Bendjebbar E, Garcia G, Balleyguier C, Merad M, Stoclin A, Jegou S, Griscelli F, Tetelboum N, Li Y, Verma S, Terris M, Dardouri T, Gupta K, Neacsu A, Chemouni F, Sefta M, Jehanno P, Bousaid I, Boursin Y, Planchet E, Azoulay M, Dachary J, Brulport F, Gonzalez A, Dehaene O, Schiratti JB, Schutte K, Pesquet JC, Talbot H, Pronier E, Wainrib G, Clozel T, Barlesi F, Bellin MF, Blum MGB. Integrating deep learning CT-scan model, biological and clinical variables to predict severity of COVID-19 patients. Nat Commun. 2021 Jan 27;12(1):634. doi: 10.1038/s41467-020-20657-4. PMID: 33504775; PMCID: PMC7840774.
- Wen J, Thibeau-Sutre E, Diaz-Melo M, Samper-González J, Routier A, Bottani S, Dormont D, Durrleman S, Burgos N, Colliot O; Alzheimer’s Disease Neuroimaging Initiative; Australian Imaging Biomarkers and Lifestyle flagship study of ageing. Convolutional neural networks for classification of Alzheimer’s disease: Overview and reproducible evaluation. Med Image Anal. 2020 Jul;63:101694. doi: 10.1016/j.media.2020.101694. Epub 2020 May 1. PMID: 32417716.
- Couvy-Duchesne B, Faouzi J, Martin B, Thibeau-Sutre E, Wild A, Ansart M, Durrleman S, Dormont D, Burgos N, Colliot O. Ensemble Learning of Convolutional Neural Network, Support Vector Machine, and Best Linear Unbiased Predictor for Brain Age Prediction: ARAMIS Contribution to the Predictive Analytics Competition 2019 Challenge. Front Psychiatry. 2020 Dec 15;11:593336. doi: 10.3389/fpsyt.2020.593336. PMID: 33384629; PMCID: PMC7770104.
- Stokes JM, Yang K, Swanson K, Jin W, Cubillos-Ruiz A, Donghia NM, MacNair CR, French S, Carfrae LA, Bloom-Ackermann Z, Tran VM, Chiappino-Pepe A, Badran AH, Andrews IW, Chory EJ, Church GM, Brown ED, Jaakkola TS, Barzilay R, Collins JJ. A Deep Learning Approach to Antibiotic Discovery. Cell. 2020 Feb 20;180(4):688-702.e13. doi: 10.1016/j.cell.2020.01.021. Erratum in: Cell. 2020 Apr 16;181(2):475-483. PMID: 32084340.