Shanoir microservices Docker images are now publicly available on the Packages section of our GitHub repository. This allow you to pull them directly from your docker-compose or docker CLI, without the need to build them locally. Available containers are : nginx datasets import users studies preclinical These are automatically built…
It is now possible to import Near-Infrared Spectroscopy data through the Brain Imaging Data Structure format in Shanoir. Shanoir also allows to create NIRS type acquisition equipment model, that can be automatically matched on import, using device serial number declared in BIDS metadata. The generated BIDS tree of the supplied…
VIP (Virtual Imaging Platform [vip.creatis.insa-lyon.fr]) is a web portal for medical imaging applications. It allows access to scientific applications as a service, as well as distributed computing resources available in the biomed virtual organization of the EGI e-infrastructure. Shanoir now allow an authenticated user to process datasets on VIP platform…
The volume occupied by study files is now detailed by type of stored files in the General tab of the Details on study view. The total volume is also displayed in the Manage studies list view. The list can be ordered by this new column, and by hovering over it,…
The total volume occupied by study files can now be reviewed in the General tab of the Details on study view. Note that this value corresponds to the size of uncompressed files. The size of exported archives can therefore vary greatly. The total size calculation is detailed in the wiki…
Since v1.6.3 it is now possible to set quality rules for your study in Shanoir. From theses quality rules you will be able to : generate a quality report from your entire study automatically add valid/error tags to your subjects prevent any dataset import that would not meet the configured…
Hi, we released recently a new version of ShanoirUploader (our Desktop application), v8.0.0, that runs now on Java 17 and could successfully test it within one university hospital in France.
We experimented recently with some MRI sequences, that reached the size of up to 30Gb per examination and could successfully import them into Shanoir, after some server configuration.
Shanoir is trying to be more FAIR (Findable, Accessible, Interoperable, Reusable), we are currently developing features for studies to be able to respect these, while keeping our security on top level. A new catalog of public studies is now available at the start page of Shanoir. You can easily join…
We will very soon release a new version of Shanoir, v1.4.3, that will bring Shanoir further on the FAIR principles. We will expose publicly findable meta-data from schema.org, that declares a Shanoir server instance is a DataCatalog. This is the first step of multiple upcoming steps to make data in…
