News – Page 2 – SHANOIR

News

NIRS BIDS extension now supported

Youenn MEREL 2024/01/25 2024/01/25Feature

It is now possible to import Near-Infrared Spectroscopy data through the Brain Imaging Data Structure format in Shanoir. Shanoir also allows to create NIRS type acquisition equipment model, that can be automatically matched on import, using device serial number declared in BIDS metadata. The generated BIDS tree of the supplied…

VIP dataset processing through Shanoir

Youenn MEREL 2023/10/26 2024/01/24Feature

VIP (Virtual Imaging Platform [vip.creatis.insa-lyon.fr]) is a web portal for medical imaging applications. It allows access to scientific applications as a service, as well as distributed computing resources available in the biomed virtual organization of the EGI e-infrastructure. Shanoir now allow an authenticated user to process datasets on VIP platform…

Study storage volume, now detailed

Youenn MEREL 2023/10/23 2023/10/26Feature

The volume occupied by study files is now detailed by type of stored files in the General tab of the Details on study view. The total volume is also displayed in the Manage studies list view. The list can be ordered by this new column, and by hovering over it,…

Study storage volume

Youenn MEREL 2023/07/13 2023/10/26Feature

The total volume occupied by study files can now be reviewed in the General tab of the Details on study view. Note that this value corresponds to the size of uncompressed files. The size of exported archives can therefore vary greatly. The total size calculation is detailed in the wiki…

Long waited feature : Quality Control

jlouis 2023/06/12 2023/06/12Uncategorized

Since v1.6.3 it is now possible to set quality rules for your study in Shanoir. From theses quality rules you will be able to : generate a quality report from your entire study automatically add valid/error tags to your subjects prevent any dataset import that would not meet the configured…

ShanoirUploader v8.0.0 is out, now Java 17

mkain 2023/06/01 2023/06/01Uncategorized

Hi, we released recently a new version of ShanoirUploader (our Desktop application), v8.0.0, that runs now on Java 17 and could successfully test it within one university hospital in France.

30Gb imports possible

mkain 2023/06/01 2023/06/01Uncategorized

We experimented recently with some MRI sequences, that reached the size of up to 30Gb per examination and could successfully import them into Shanoir, after some server configuration.

Access request rework in Shanoir: A public catalog for more FAIRness

jdouteau 2023/02/17 2023/02/17Uncategorized

Shanoir is trying to be more FAIR (Findable, Accessible, Interoperable, Reusable), we are currently developing features for studies to be able to respect these, while keeping our security on top level. A new catalog of public studies is now available at the start page of Shanoir. You can easily join…

Shanoir for FAIR

mkain 2022/11/16 2022/11/16Uncategorized

We will very soon release a new version of Shanoir, v1.4.3, that will bring Shanoir further on the FAIR principles. We will expose publicly findable meta-data from schema.org, that declares a Shanoir server instance is a DataCatalog. This is the first step of multiple upcoming steps to make data in…

Study restriction by center

jdouteau 2022/09/16 2022/09/16Uncategorized

A short video to present a new security feature, limit study by center. It is now possible to limit the visibility of a study user to certain centers.